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AT5G39740 - ( 60S ribosomal protein L5 (RPL5B) )

95 Proteins interacs with AT5G39740

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G25520	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.4453	Class C: plasma membrane nucleus	ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.3148	Class C: plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G56070	Predicted two hybrid two hybrid	FSW = 0.0193	Class C: plasma membrane nucleus	LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2151	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.1724	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11964	Predicted Affinity Capture-MS	FSW = 0.2708	Class C: plasma membrane nucleus	RNA BINDING
AT2G33370	Predicted Affinity Capture-MS	FSW = 0.1308	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.2577	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.2353	Class C: plasma membrane nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.1458	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.1611	Class C: plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G02450	Predicted two hybrid	FSW = 0.0331	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36C)
AT5G27850	Predicted Affinity Capture-MS	FSW = 0.1916	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT3G28715	Predicted two hybrid	FSW = 0.0122	Class C: plasma membrane	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.2313	Class C: plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G28710	Predicted two hybrid	FSW = 0.0044	Class C: plasma membrane	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.2280	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT5G64740	Predicted two hybrid	FSW = 0.0060	Class C: plasma membrane	CESA6 (CELLULOSE SYNTHASE 6) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.3143	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.1571	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT1G26630	Predicted in vivo in vitro two hybrid Affinity Capture-MS	FSW = 0.0165	Class C: plasma membrane	FBR12 (FUMONISIN B1-RESISTANT12) TRANSLATION INITIATION FACTOR
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.2250	Class C: nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3765	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G35620	Predicted two hybrid Co-expression	FSW = 0.0109	Class C: nucleus	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) RNA 7-METHYLGUANOSINE CAP BINDING / RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.3551	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G55620	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3130	Class C: nucleus	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.1887	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.2314	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G58660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4163	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT3G23620	Predicted Affinity Capture-MS far western blotting Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.3538	Class C: nucleus	BRIX DOMAIN-CONTAINING PROTEIN
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.4321	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT1G72440	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3787	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G16810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3819	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G48240	Predicted Affinity Capture-MS	FSW = 0.2230	Class C: nucleus	UNKNOWN PROTEIN
AT5G55920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3883	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G05060	Predicted Affinity Capture-MS	FSW = 0.1064	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.2370	Class C: nucleus	RNA HELICASE PUTATIVE
AT5G15550	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2883	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G37990	Predicted Affinity Capture-Western two hybrid Affinity Capture-Western Protein-RNA Reconstituted Complex Affinity Capture-MS Co-purification	FSW = 0.1722	Class C: nucleus	RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.2152	Unknown	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G14800	Predicted Affinity Capture-MS	FSW = 0.0033	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G18730	Predicted Affinity Capture-MS far western blotting	FSW = 0.1414	Unknown	RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G63840	Predicted two hybrid two hybrid	FSW = 0.0081	Unknown	RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.4886	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G30775	Predicted two hybrid	FSW = 0.0117	Unknown	ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) PROLINE DEHYDROGENASE
AT5G38710	Predicted two hybrid	FSW = 0.0337	Unknown	PROLINE OXIDASE PUTATIVE / OSMOTIC STRESS-RESPONSIVE PROLINE DEHYDROGENASE PUTATIVE
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.2639	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT1G50920	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4776	Unknown	GTP-BINDING PROTEIN-RELATED
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.4862	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.1131	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.2087	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0305	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT3G22660	Predicted Affinity Capture-MS	FSW = 0.3166	Unknown	RRNA PROCESSING PROTEIN-RELATED
AT2G27970	Predicted two hybrid	FSW = 0.0067	Unknown	CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G24080	Predicted two hybrid two hybrid Co-expression	FSW = 0.1288	Unknown	KRR1 FAMILY PROTEIN
AT5G01390	Predicted two hybrid	FSW = 0.0070	Unknown	DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT5G06160	Predicted two hybrid two hybrid Co-expression	FSW = 0.0132	Unknown	ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G12980	Predicted two hybrid two hybrid	FSW = 0.0117	Unknown	RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G05760	Predicted two hybrid two hybrid	FSW = 0.0075	Unknown	NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G55480	Predicted two hybrid	FSW = 0.0068	Unknown	ADAPTIN FAMILY PROTEIN
AT2G16950	Predicted in vitro	FSW = 0.0366	Unknown	TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT3G02760	Predicted in vitro in vivo Affinity Capture-MS	FSW = 0.0260	Unknown	ATP BINDING / AMINOACYL-TRNA LIGASE/ HISTIDINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G59020	Predicted in vitro	FSW = 0.0114	Unknown	BINDING / PROTEIN TRANSPORTER
AT5G47080	Predicted two hybrid two hybrid two hybrid in vivo in vivo two hybrid in vitro in vivo	FSW = 0.0194	Unknown	CKB1 PROTEIN KINASE REGULATOR
AT5G67380	Predicted biochemical	FSW = 0.0605	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT4G15770	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2909	Unknown	RNA BINDING / PROTEIN BINDING
AT1G03530	Predicted Affinity Capture-MS	FSW = 0.1126	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G10170	Predicted Affinity Capture-MS	FSW = 0.0268	Unknown	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G13160	Predicted Affinity Capture-MS	FSW = 0.2154	Unknown	SDA1 FAMILY PROTEIN
AT1G25260	Predicted Affinity Capture-MS	FSW = 0.2232	Unknown	ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G52980	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2124	Unknown	GTP-BINDING FAMILY PROTEIN
AT1G73570	Predicted Affinity Capture-MS	FSW = 0.0104	Unknown	SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT1G79150	Predicted Affinity Capture-MS	FSW = 0.3201	Unknown	BINDING
AT2G03820	Predicted Affinity Capture-MS	FSW = 0.0838	Unknown	NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT2G18220	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3849	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G21440	Predicted Affinity Capture-MS	FSW = 0.3072	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G27200	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1689	Unknown	GTP-BINDING FAMILY PROTEIN
AT2G34357	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2246	Unknown	BINDING
AT2G36930	Predicted Affinity Capture-MS	FSW = 0.1641	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT3G15460	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3848	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G16840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2086	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.2825	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.4264	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01560	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3161	Unknown	MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G16630	Predicted Affinity Capture-MS	FSW = 0.3495	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G18905	Predicted Affinity Capture-MS	FSW = 0.0905	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G05450	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3518	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G06360	Predicted Affinity Capture-Western	FSW = 0.2058	Unknown	RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G14520	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3456	Unknown	PESCADILLO-RELATED
AT5G20600	Predicted Affinity Capture-MS	FSW = 0.3401	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G46840	Predicted Affinity Capture-MS	FSW = 0.2736	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.5006	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G66100	Predicted Affinity Capture-MS	FSW = 0.0658	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT5G54750	Predicted two hybrid Co-expression	FSW = 0.0300	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT4G28480	Predicted two hybrid	FSW = 0.0457	Unknown	DNAJ HEAT SHOCK FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT5G39740 - ( 60S ribosomal protein L5 (RPL5B) )

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