Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48240 - ( unknown protein )

24 Proteins interacs with AT5G48240
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.1167

Class C:

nucleus

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G47610

Predicted

Affinity Capture-MS

FSW = 0.1694

Class C:

nucleus

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.1810

Class C:

nucleus

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT5G39740

Predicted

Affinity Capture-MS

FSW = 0.2230

Class C:

nucleus

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.1911

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.0985

Class C:

nucleus

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.1160

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G23620

Predicted

Affinity Capture-MS

FSW = 0.2259

Class C:

nucleus

BRIX DOMAIN-CONTAINING PROTEIN
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.2725

Class C:

nucleus

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT3G16810

Predicted

Affinity Capture-MS

FSW = 0.3349

Class C:

nucleus

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT3G12860

Predicted

Affinity Capture-MS

FSW = 0.0924

Class C:

nucleus

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G55620

Predicted

Affinity Capture-MS

FSW = 0.2450

Class C:

nucleus

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT4G16720

Predicted

Affinity Capture-MS

FSW = 0.0817

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15A)
AT1G62020

Predicted

Affinity Capture-MS

FSW = 0.0299

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT1G50920

Predicted

Affinity Capture-MS

FSW = 0.2898

Unknown

GTP-BINDING PROTEIN-RELATED
AT3G15460

Predicted

Affinity Capture-MS

FSW = 0.3164

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.2099

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT4G01560

Predicted

Affinity Capture-MS

FSW = 0.3046

Unknown

MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT5G20600

Predicted

Affinity Capture-MS

FSW = 0.2956

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT2G37840

Predicted

biochemical

FSW = 0.0427

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G01090

Predicted

biochemical

FSW = 0.0384

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT5G14520

Predicted

Affinity Capture-MS

FSW = 0.2333

Unknown

PESCADILLO-RELATED
AT5G61770

Predicted

Affinity Capture-MS

FSW = 0.3107

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.3335

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454