Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48240 - ( unknown protein )
24 Proteins interacs with AT5G48240| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G09630
   | PredictedAffinity Capture-MS | FSW = 0.1167
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.1694
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.1810
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT5G39740
| PredictedAffinity Capture-MS | FSW = 0.2230
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
| AT5G04600
| PredictedAffinity Capture-MS | FSW = 0.1911
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G74060
| PredictedAffinity Capture-MS | FSW = 0.0985
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT4G25630
| PredictedAffinity Capture-MS | FSW = 0.1160
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT3G23620
| PredictedAffinity Capture-MS | FSW = 0.2259
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.2725
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT3G16810
| PredictedAffinity Capture-MS | FSW = 0.3349
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT3G12860
| PredictedAffinity Capture-MS | FSW = 0.0924
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT3G55620
| PredictedAffinity Capture-MS | FSW = 0.2450
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT4G16720
| PredictedAffinity Capture-MS | FSW = 0.0817
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15A) |
| AT1G62020
| PredictedAffinity Capture-MS | FSW = 0.0299
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
| AT1G50920
| PredictedAffinity Capture-MS | FSW = 0.2898
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT3G15460
| PredictedAffinity Capture-MS | FSW = 0.3164
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.2099
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT4G01560
| PredictedAffinity Capture-MS | FSW = 0.3046
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT5G20600
| PredictedAffinity Capture-MS | FSW = 0.2956
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
| AT2G37840
| Predictedbiochemical | FSW = 0.0427
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT3G01090
| Predictedbiochemical | FSW = 0.0384
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
| AT5G14520
| PredictedAffinity Capture-MS | FSW = 0.2333
| Unknown | PESCADILLO-RELATED |
| AT5G61770
| PredictedAffinity Capture-MS | FSW = 0.3107
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT5G65900
| PredictedAffinity Capture-MS | FSW = 0.3335
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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