Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G14520 - ( pescadillo-related )

100 Proteins interacs with AT5G14520
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G25520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2681

Unknown

ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G18020

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1486

Unknown

EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1617

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT1G27400

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0712

Unknown

60S RIBOSOMAL PROTEIN L17 (RPL17A)
AT2G01250

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0875

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT2G47610

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2253

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.1759

Unknown

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.1513

Unknown

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G43170

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2304

Unknown

ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G36130

Predicted

interaction prediction

FSW = 0.0306

Unknown

60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT5G47690

Predicted

Affinity Capture-MS

FSW = 0.0339

Unknown

BINDING
AT3G13580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3157

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4489

Unknown

RIBOSOMAL PROTEIN-RELATED
AT5G53480

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0243

Unknown

IMPORTIN BETA-2 PUTATIVE
AT1G67120Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1363

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT5G39740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3456

Unknown

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2395

Unknown

RNA BINDING
AT2G39460

Predicted

Phenotypic Enhancement

Co-expression

FSW = 0.1416

Unknown

RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G33370Predicted

Affinity Capture-MS

FSW = 0.0988

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.2104

Unknown

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G41880

Predicted

Affinity Capture-MS

FSW = 0.0939

Unknown

60S RIBOSOMAL PROTEIN L35A (RPL35AB)
AT1G74270

Predicted

Affinity Capture-MS

FSW = 0.1843

Unknown

60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT4G26110

Predicted

Affinity Capture-MS

FSW = 0.0083

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT2G19480

Predicted

Affinity Capture-MS

FSW = 0.0130

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT2G40360

Predicted

interaction prediction

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

Co-expression

FSW = 0.4489

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G77840

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0336

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT2G44680

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0386

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT2G44860

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2912

Unknown

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT5G04600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4470

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G25630

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1760

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G10300Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3850

Unknown

GTP-BINDING PROTEIN-RELATED
AT4G26600

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2266

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G58660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4753

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT1G65030

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1236

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G55620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4848

Unknown

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G72440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4020

Unknown

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G23620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5029

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.2411

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT5G08180

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0627

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT5G55920

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4702

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT5G48240

Predicted

Affinity Capture-MS

FSW = 0.2333

Unknown

UNKNOWN PROTEIN
AT3G07050

Predicted

interaction prediction

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4517

Unknown

GTP-BINDING FAMILY PROTEIN
AT3G06720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0071

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0019

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT2G37990

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2096

Unknown

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT4G08350

Predicted

Affinity Capture-MS

FSW = 0.0420

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0481

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT3G18600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1984

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G15550

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.4798

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G15870

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0295

Unknown

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT5G02050

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0236

Unknown

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT1G50920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

interaction prediction

Co-expression

FSW = 0.5249

Unknown

GTP-BINDING PROTEIN-RELATED
AT2G37560

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0131

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT3G22660

Predicted

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.3714

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT1G61580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3398

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.1294

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G63160

Predicted

two hybrid

Co-expression

FSW = 0.0028

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G04480Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0786

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G13160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3640

Unknown

SDA1 FAMILY PROTEIN
AT1G23280

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0893

Unknown

MAK16 PROTEIN-RELATED
AT1G25260

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2939

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G52980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2959

Unknown

GTP-BINDING FAMILY PROTEIN
AT1G78010

Predicted

Affinity Capture-MS

FSW = 0.0288

Unknown

TRNA MODIFICATION GTPASE PUTATIVE
AT1G79150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3870

Unknown

BINDING
AT2G18220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4934

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G21440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

FSW = 0.4114

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G23070

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0202

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT3G15460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.3570

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G16840

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2896

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2034

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G55280

Predicted

Phenotypic Enhancement

Affinity Capture-MS

FSW = 0.2822

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01560

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4617

Unknown

MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G12620

Predicted

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

FSW = 0.0453

Unknown

ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G15770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.4245

Unknown

RNA BINDING / PROTEIN BINDING
AT4G16630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4341

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G25730

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1848

Unknown

FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT5G06360

Predicted

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.3131

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT1G03530

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1180

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT2G19540

Predicted

Affinity Capture-Western

FSW = 0.0408

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G36930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2672

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G39840

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0544

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G57870

Predicted

Synthetic Lethality

FSW = 0.0021

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT4G18593

Predicted

two hybrid

interologs mapping

interaction prediction

FSW = 0.0082

Unknown

DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED
AT5G05450

Predicted

Affinity Capture-MS

FSW = 0.3740

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G20600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3736

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G57160

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1133

Unknown

ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G61770

Predicted

interaction prediction

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3552

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G44635

Predicted

Co-purification

FSW = 0.0163

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT5G65900

Predicted

interaction prediction

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3870

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G77050Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2188

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G77600

Predicted

Affinity Capture-MS

FSW = 0.0346

Unknown

BINDING
AT1G02690

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0109

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT2G29400

Predicted

Affinity Capture-MS

FSW = 0.0629

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G23080

Predicted

Affinity Capture-MS

FSW = 0.1247

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G52930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3664

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT1G36240

Predicted

Affinity Capture-MS

FSW = 0.0882

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT1G36730

Predicted

Affinity Capture-MS

FSW = 0.0248

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT3G49660

Predicted

Affinity Capture-MS

FSW = 0.0022

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G07070

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0585

Unknown

60S RIBOSOMAL PROTEIN L35A (RPL35AA)
AT5G67380

Predicted

interaction prediction

FSW = 0.0704

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454