Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G14520 - ( pescadillo-related )
100 Proteins interacs with AT5G14520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25520 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2681
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G18020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1486
| Unknown | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1617
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G27400 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0712
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
AT2G01250 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0875
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G47610 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2253
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.1759
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.1513
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G43170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2304
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G36130 | Predictedinteraction prediction | FSW = 0.0306
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT5G47690 | PredictedAffinity Capture-MS | FSW = 0.0339
| Unknown | BINDING |
AT3G13580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3157
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT1G06380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4489
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT5G53480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0243
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G67120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1363
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT5G39740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3456
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2395
| Unknown | RNA BINDING |
AT2G39460 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.1416
| Unknown | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G33370 | PredictedAffinity Capture-MS | FSW = 0.0988
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.2104
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT1G41880 | PredictedAffinity Capture-MS | FSW = 0.0939
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AB) |
AT1G74270 | PredictedAffinity Capture-MS | FSW = 0.1843
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AC) |
AT4G26110 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT2G40360 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-expression | FSW = 0.4489
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G77840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0336
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT2G44680 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0386
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT2G44860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2912
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4470
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G25630 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1760
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3850
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT4G26600 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2266
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G58660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4753
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT1G65030 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1236
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4848
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT1G72440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4020
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5029
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.2411
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT5G08180 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0627
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G55920 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4702
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G48240 | PredictedAffinity Capture-MS | FSW = 0.2333
| Unknown | UNKNOWN PROTEIN |
AT3G07050 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4517
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G06720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0071
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0019
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G37990 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2096
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0481
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT3G18600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1984
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G15550 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.4798
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G15870 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0295
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT5G02050 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0236
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT1G50920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction predictionCo-expression | FSW = 0.5249
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT2G37560 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0131
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT3G22660 | PredictedAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3714
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3398
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56710 | PredictedAffinity Capture-MS | FSW = 0.1294
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT1G63160 | Predictedtwo hybridCo-expression | FSW = 0.0028
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G04480 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0786
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G13160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3640
| Unknown | SDA1 FAMILY PROTEIN |
AT1G23280 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0893
| Unknown | MAK16 PROTEIN-RELATED |
AT1G25260 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2939
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G52980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2959
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G78010 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | TRNA MODIFICATION GTPASE PUTATIVE |
AT1G79150 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3870
| Unknown | BINDING |
AT2G18220 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4934
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT2G21440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.4114
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G23070 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0202
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT3G15460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3570
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G16840 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2896
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G18740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2034
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G55280 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.2822
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G01560 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4617
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT4G12620 | PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.0453
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G15770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.4245
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G16630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4341
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G25730 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1848
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT5G06360 | PredictedAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.3131
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
AT1G03530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1180
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT2G19540 | PredictedAffinity Capture-Western | FSW = 0.0408
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G36930 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2672
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G39840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0544
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G57870 | PredictedSynthetic Lethality | FSW = 0.0021
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT4G18593 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0082
| Unknown | DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED |
AT5G05450 | PredictedAffinity Capture-MS | FSW = 0.3740
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G20600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3736
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G57160 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1133
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT5G61770 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3552
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G44635 | PredictedCo-purification | FSW = 0.0163
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G65900 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3870
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G77050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2188
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G77600 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | BINDING |
AT1G02690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0109
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.1247
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G52930 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3664
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.0882
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT1G36730 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT3G49660 | PredictedAffinity Capture-MS | FSW = 0.0022
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G07070 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0585
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AA) |
AT5G67380 | Predictedinteraction prediction | FSW = 0.0704
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454