Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G56710 - ( 60S ribosomal protein L31 (RPL31C) )
73 Proteins interacs with AT5G56710Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04920![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5268
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT3G49910![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4756
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G18020![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4285
| Unknown | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G31700![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3219
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2712
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G42740![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4872
| Unknown | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09200![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2520
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT1G33140![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4014
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G36530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0032
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT3G49010![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3864
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G67430![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5244
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT2G37270![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3154
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3163
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G34480![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3001
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT5G23670![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0151
| Unknown | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G66580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4758
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT5G22440![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4193
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT5G10450![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G48830![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4886
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
AT2G09990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5112
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT3G19170![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0180
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT3G13580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3898
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT5G39740![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2087
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT3G11510![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4446
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT2G37190![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4200
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT4G00100![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3899
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G27710![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5438
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT1G71860![]() ![]() ![]() ![]() | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0240
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT2G37600![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5038
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G46430![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4678
| Unknown | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
AT1G41880![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2310
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AB) |
AT1G70600![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.6035
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G02230![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4834
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT4G15000![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4237
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT2G19740![]() ![]() ![]() ![]() | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1747
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31A) |
AT5G04600![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2205
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G17390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4377
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.3266
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT1G74060![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4110
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT3G06700![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4363
| Unknown | 60S RIBOSOMAL PROTEIN L29 (RPL29A) |
AT1G72440![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2406
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G58660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2272
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT2G19385![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | ZINC ION BINDING |
AT5G09500![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4456
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
AT1G61580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4151
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G12280![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0062
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT2G44530![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0084
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE |
AT3G48780![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0301
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT5G02760![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0150
| Unknown | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN |
AT5G11010![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0750
| Unknown | PRE-MRNA CLEAVAGE COMPLEX-RELATED |
AT5G38050![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0211
| Unknown | UNKNOWN PROTEIN |
AT1G34770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | MAGE-8 ANTIGEN-RELATED |
AT2G17870![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | COLD-SHOCK DNA-BINDING FAMILY PROTEIN |
AT4G34910![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1157
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G38110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT1G22240![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2432
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT2G15910![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.1100
| Unknown | BINDING |
AT3G18740![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4491
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G23390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5352
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
AT3G24830![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3390
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT3G55280![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5518
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G02560![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | HTA12 DNA BINDING |
AT5G14520![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1294
| Unknown | PESCADILLO-RELATED |
AT1G18830 | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G52980![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2072
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G57660 | PredictedAffinity Capture-MS | FSW = 0.3902
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
AT2G36930![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0968
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT3G60240![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G20020![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westerntwo hybridinterologs mappingsynthetic growth defect | FSW = 0.0213
| Unknown | UNKNOWN PROTEIN |
AT4G38630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0312
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G24410![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT4G26230![]() ![]() ![]() ![]() | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0948
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454