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AT3G11510 - ( 40S ribosomal protein S14 (RPS14B) )

77 Proteins interacs with AT3G11510

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.5726	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.4738	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.5486	Class C: plasma membrane nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.4838	Class C: plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.3328	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.6498	Class C: plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.3225	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.6603	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.4508	Class C: plasma membrane nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.3778	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.1711	Class C: plasma membrane nucleus	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.5253	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.5081	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.5073	Class C: plasma membrane nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.5354	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT2G36160	Predicted Synthetic Lethality Affinity Capture-MS Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.2380	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.5159	Class C: plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.4793	Class C: plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.3720	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.4890	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.5701	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.5699	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.1000	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT1G41880	Predicted Affinity Capture-MS	FSW = 0.1942	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L35A (RPL35AB)
AT1G74270	Predicted Affinity Capture-MS	FSW = 0.2303	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.6300	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.4663	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.4269	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.4502	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G46900	Predicted Affinity Capture-MS	FSW = 0.0058	Class C: plasma membrane	COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.4638	Class C: nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.4109	Class C: nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.5066	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.4491	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.1679	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT5G37720	Predicted Affinity Capture-MS	FSW = 0.0207	Class C: nucleus	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.5396	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.3145	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT5G15520	Predicted Affinity Capture-MS	FSW = 0.1730	Class C: nucleus	40S RIBOSOMAL PROTEIN S19 (RPS19B)
AT2G41840	Predicted Affinity Capture-MS	FSW = 0.2368	Class C: nucleus	40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT3G53020	Predicted Affinity Capture-MS	FSW = 0.3741	Class C: nucleus	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.5713	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G72440	Predicted Affinity Capture-MS	FSW = 0.2057	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G66540	Predicted Affinity Capture-Western	FSW = 0.1521	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.4177	Unknown	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.5954	Unknown	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.3223	Unknown	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.4021	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT2G33340	Predicted Co-purification	FSW = 0.0795	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G03860	Predicted interologs mapping	FSW = 0.0261	Unknown	MLS (MALATE SYNTHASE) MALATE SYNTHASE
AT5G66590	Predicted Affinity Capture-MS	FSW = 0.0106	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G18380	Predicted Affinity Capture-MS	FSW = 0.0384	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT3G52580	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0266	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT1G10490	Predicted Affinity Capture-MS	FSW = 0.3081	Unknown	UNKNOWN PROTEIN
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.4246	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.2779	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.4446	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G69070	Predicted Affinity Capture-MS	FSW = 0.1362	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT2G46900	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0556	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BASIC HELIX-LOOP-HELIX NULP1-TYPE (INTERPROIPR006994) HAS 3014 BLAST HITS TO 2357 PROTEINS IN 239 SPECIES ARCHAE - 2 BACTERIA - 96 METAZOA - 1166 FUNGI - 321 PLANTS - 100 VIRUSES - 47 OTHER EUKARYOTES - 1282 (SOURCE NCBI BLINK)
AT1G03530	Predicted Affinity Capture-MS	FSW = 0.1976	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G15440	Predicted Affinity Capture-MS	FSW = 0.1377	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G31660	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1981	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.4137	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0533	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G40010	Predicted Affinity Capture-MS	FSW = 0.0194	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT3G12670	Predicted Affinity Capture-MS	FSW = 0.0398	Unknown	EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G24080	Predicted Affinity Capture-MS	FSW = 0.1534	Unknown	KRR1 FAMILY PROTEIN
AT4G16970	Predicted Synthetic Lethality	FSW = 0.0035	Unknown	ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G08420	Predicted interologs mapping	FSW = 0.2295	Unknown	RNA BINDING
AT5G60340	Predicted Affinity Capture-MS two hybrid	FSW = 0.0262	Unknown	MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.5066	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.5161	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.4318	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.4487	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G79975	Predicted two hybrid	FSW = 0.0861	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G15030	Predicted two hybrid	FSW = 0.0639	Unknown	UNKNOWN PROTEIN
AT4G36630	Predicted two hybrid	FSW = 0.0584	Unknown	EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT3G11510 - ( 40S ribosomal protein S14 (RPS14B) )

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