Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G62300 - ( 40S ribosomal protein S20 (RPS20C) )
116 Proteins interacs with AT5G62300| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G09200
   | PredictedAffinity Capture-MS | FSW = 0.0554
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.0899
| Class C:plasma membrane | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G01250
| PredictedAffinity Capture-MS | FSW = 0.1758
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.0855
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.0676
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G22780
| PredictedAffinity Capture-MS | FSW = 0.3640
| Class C:plasma membrane | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.0664
| Class C:plasma membrane | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.0550
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT2G09990
| PredictedAffinity Capture-MS | FSW = 0.1011
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
| AT1G15210
| PredictedAffinity Capture-MS | FSW = 0.4414
| Class C:plasma membrane | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.3257
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.3640
| Class C:plasma membrane | MYB FAMILY TRANSCRIPTION FACTOR |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.3669
| Class C:plasma membrane | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G47370
| PredictedPhylogenetic profile method | FSW = 0.1072
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
| AT3G11510
| PredictedAffinity Capture-MS | FSW = 0.1000
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
| AT1G27970
| PredictedAffinity Capture-MS | FSW = 0.6308
| Class C:plasma membrane | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.0863
| Class C:plasma membrane | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G75840
| PredictedAffinity Capture-MS | FSW = 0.2068
| Class C:plasma membrane | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
| AT2G21540
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3080
| Class C:plasma membrane | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.3962
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT1G70600
| PredictedAffinity Capture-MS | FSW = 0.0855
| Class C:plasma membrane | STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.1189
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT4G15000
| PredictedAffinity Capture-MS | FSW = 0.0757
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
| AT5G43370
| PredictedAffinity Capture-MS | FSW = 0.3788
| Class C:plasma membrane | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G22120
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3185
| Class C:plasma membrane | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
| AT1G13320
| PredictedAffinity Capture-MS | FSW = 0.1661
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT4G36860
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4795
| Class C:plasma membrane | ZINC ION BINDING |
| AT1G09640
| PredictedAffinity Capture-MS | FSW = 0.3766
| Class C:plasma membrane | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT4G32470
| PredictedAffinity Capture-MS | FSW = 0.4184
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT5G15200
| PredictedAffinity Capture-MS | FSW = 0.0915
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT1G33140
| PredictedAffinity Capture-MS | FSW = 0.0918
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G24780
| PredictedAffinity Capture-MS | FSW = 0.2301
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0546
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G20390
| PredictedAffinity Capture-MS | FSW = 0.1482
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
| AT2G29990
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3013
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
| AT2G19860
| PredictedAffinity Capture-MS | FSW = 0.4552
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G07100
| Predictedtwo hybrid | FSW = 0.0138
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
| AT3G19980
| PredictedAffinity Capture-MS | FSW = 0.3714
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G24400
| PredictedAffinity Capture-MS | FSW = 0.2400
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
| AT1G74710
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0177
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
| AT3G16950
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3984
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT4G26970
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3650
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
| AT1G51040
| PredictedAffinity Capture-MS | FSW = 0.1720
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
| AT2G33340
| PredictedCo-purification | FSW = 0.0388
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.3994
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.2626
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT4G23430
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2167
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT5G44500
| PredictedAffinity Capture-MS | FSW = 0.4569
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT2G47640
| PredictedAffinity Capture-MS | FSW = 0.1209
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT5G59870
| PredictedAffinity Capture-MS | FSW = 0.3893
| Unknown | HTA6 DNA BINDING |
| AT4G13980
| Predictedbiochemical | FSW = 0.0069
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G37470
| PredictedAffinity Capture-MS | FSW = 0.3697
| Unknown | HISTONE H2B PUTATIVE |
| AT3G10920
| PredictedAffinity Capture-MS | FSW = 0.2370
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
| AT1G72480
| PredictedAffinity Capture-MS | FSW = 0.4310
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
| AT2G13650
| PredictedAffinity Capture-MS | FSW = 0.3871
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT4G30990
| PredictedAffinity Capture-MS | FSW = 0.3454
| Unknown | BINDING |
| AT4G33710
| PredictedAffinity Capture-MS | FSW = 0.1422
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT4G25780
| PredictedAffinity Capture-MS | FSW = 0.2286
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT3G08730
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1651
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G09500
| PredictedAffinity Capture-MS | FSW = 0.0842
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
| AT3G52580
| PredictedAffinity Capture-MS | FSW = 0.3995
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.4317
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT5G52650
| PredictedAffinity Capture-MS | FSW = 0.0585
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10C) |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.3232
| Unknown | PSF2 |
| AT3G22880
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1269
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.4242
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT3G48150
| Predictedtwo hybrid | FSW = 0.0164
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
| AT1G01760
| Predictedtwo hybrid | FSW = 0.0300
| Unknown | RNA BINDING / ADENOSINE DEAMINASE |
| AT1G77670
| Predictedtwo hybrid | FSW = 0.0176
| Unknown | AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN |
| AT2G36260
| Predictedtwo hybrid | FSW = 0.0111
| Unknown | IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE |
| AT4G26750
| Predictedtwo hybrid | FSW = 0.0182
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT1G74150
| Predictedtwo hybrid | FSW = 0.0328
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G186101) HAS 8525 BLAST HITS TO 4249 PROTEINS IN 295 SPECIES ARCHAE - 10 BACTERIA - 313 METAZOA - 3989 FUNGI - 859 PLANTS - 1220 VIRUSES - 19 OTHER EUKARYOTES - 2115 (SOURCE NCBI BLINK) |
| AT2G20635 | Predictedtwo hybrid | FSW = 0.0147
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G20696
| PredictedAffinity Capture-MS | FSW = 0.3333
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G20920
| PredictedAffinity Capture-MS | FSW = 0.3054
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G24706
| PredictedAffinity Capture-MS | FSW = 0.3766
| Unknown | UNKNOWN PROTEIN |
| AT1G51770
| PredictedAffinity Capture-MS | FSW = 0.4697
| Unknown | UNKNOWN PROTEIN |
| AT1G55730
| PredictedAffinity Capture-MS | FSW = 0.3761
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT1G58520
| PredictedAffinity Capture-MS | FSW = 0.2774
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
| AT1G62880
| PredictedAffinity Capture-MS | FSW = 0.4156
| Unknown | CORNICHON FAMILY PROTEIN |
| AT1G63660
| PredictedAffinity Capture-MS | FSW = 0.1478
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.4898
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.3719
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G01770
| PredictedAffinity Capture-MS | FSW = 0.2411
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
| AT2G03667
| PredictedAffinity Capture-MS | FSW = 0.3940
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
| AT2G16740
| PredictedAffinity Capture-MS | FSW = 0.1932
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G17620
| PredictedAffinity Capture-MS | FSW = 0.2662
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT2G19910
| PredictedAffinity Capture-MS | FSW = 0.4965
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G21250
| PredictedAffinity Capture-MS | FSW = 0.2792
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.1628
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT2G43360
| PredictedAffinity Capture-MS | FSW = 0.3875
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
| AT2G46860
| PredictedAffinity Capture-MS | FSW = 0.5541
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT3G02320
| PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.3667
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G11900
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3056
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
| AT3G12200
| PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.4721
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.4173
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G20650
| PredictedAffinity Capture-MS | FSW = 0.4436
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.3709
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G24080
| PredictedAffinity Capture-MS | FSW = 0.0485
| Unknown | KRR1 FAMILY PROTEIN |
| AT3G30842
| PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.4806
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G51880
| PredictedAffinity Capture-MS | FSW = 0.2706
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.3519
| Unknown | ATATG18A |
| AT4G17380
| PredictedAffinity Capture-MS | FSW = 0.1882
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
| AT4G19645
| PredictedAffinity Capture-MS | FSW = 0.1966
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
| AT4G26810
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2626
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT4G34880
| PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | AMIDASE FAMILY PROTEIN |
| AT4G35620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2911
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.4081
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G09630
| PredictedAffinity Capture-MS | FSW = 0.3937
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G19820
| PredictedAffinity Capture-MS | FSW = 0.4528
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G27640
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2544
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT5G54200
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2681
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT5G57890
| PredictedAffinity Capture-MS | FSW = 0.3125
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
| AT3G45030 | PredictedPhylogenetic profile method | FSW = 0.1118
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20A) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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