Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G13650 - ( GONST1 (Golgi Nucleotide Sugar Transporter 1) GDP-mannose transmembrane transporter/ nucleotide-sugar transmembrane transporter )
108 Proteins interacs with AT2G13650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G18220 | Experimental | FSW = 0.0288
| Unknown | PURINE PERMEASE FAMILY PROTEIN |
AT2G45200 | PredictedPhenotypic Enhancement | FSW = 0.0382
| Class C:golgi | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT1G31780 | PredictedPhenotypic Enhancement | FSW = 0.0336
| Class C:golgi | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G72480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4404
| Class C:golgi | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.4281
| Class C:golgi | BINDING |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.6445
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT5G61790 | PredictedPhenotypic Enhancement | FSW = 0.0145
| Unknown | CALNEXIN 1 (CNX1) |
AT3G47520 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.0546
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.5023
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.4147
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.5851
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5836
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT4G04620 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | ATG8B (AUTOPHAGY 8B) MICROTUBULE BINDING |
AT2G30710 | PredictedPhenotypic Enhancement | FSW = 0.0357
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0461
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.5525
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.6390
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.4616
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G07890 | PredictedAffinity Capture-MS | FSW = 0.0416
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5917
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G65240 | PredictedAffinity Capture-MS | FSW = 0.1743
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.5487
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3497
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.1925
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.5917
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G06040 | PredictedAffinity Capture-MS | FSW = 0.5394
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.4740
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.5024
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT1G27970 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.5386
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0367
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.3609
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.6153
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6114
| Unknown | ZINC ION BINDING |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.3871
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G23900 | PredictedAffinity Capture-Western | FSW = 0.0900
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1872
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4716
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G02490 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.4729
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT5G40000 | PredictedAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0096
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.1812
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.5939
| Unknown | HTA6 DNA BINDING |
AT5G27720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0301
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.4682
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4793
| Unknown | HISTONE H2B PUTATIVE |
AT3G20970 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0885
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.2423
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G01020 | PredictedPhenotypic Enhancement | FSW = 0.0554
| Unknown | ARV1 |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.2781
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.6455
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.5966
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.5417
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.4485
| Unknown | PSF2 |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.5380
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT1G11530 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.5419
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G33090 | PredictedAffinity Capture-Westerninterologs mappingSynthetic RescueAffinity Capture-Westerninterologs mappingSynthetic Rescue | FSW = 0.1555
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.6257
| Unknown | UNKNOWN PROTEIN |
AT1G59730 | PredictedAffinity Capture-MS | FSW = 0.1544
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.6183
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.5198
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.5104
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT1G05650 | PredictedSynthetic Lethality | FSW = 0.3150
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G08260 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G11660 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.4943
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.3221
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0797
| Unknown | UNKNOWN PROTEIN |
AT1G33110 | PredictedAffinity Capture-MS | FSW = 0.5061
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G63660 | PredictedAffinity Capture-MS | FSW = 0.0981
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.5922
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.5911
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.1727
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.2409
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G34770 | PredictedPhenotypic Enhancement | FSW = 0.0233
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G35390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2445
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.0425
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.4142
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.0639
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0642
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5994
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.4784
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.4335
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.5032
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.5232
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53510 | PredictedAffinity Capture-MS | FSW = 0.3548
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.1221
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G04955 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE |
AT4G14670 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G16710 | PredictedAffinity Capture-MS | FSW = 0.0482
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 28 |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.5920
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT5G09630 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.5509
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.5419
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0185
| Unknown | BINDING |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.4620
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3046
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G59040 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.0984
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.5487
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.4302
| Unknown | ATATG18A |
AT4G09150 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | T-COMPLEX PROTEIN 11 |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.5072
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.4195
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0680
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.4783
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4336
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G57330 | PredictedAffinity Capture-MS | FSW = 0.1386
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454