Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G31780 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s Conserved oligomeric complex COG6 (InterProIPR010490) Has 281 Blast hits to 279 proteins in 131 species Archae - 0 Bacteria - 2 Metazoa - 132 Fungi - 106 Plants - 21 Viruses - 0 Other Eukaryotes - 20 (source NCBI BLink) )

108 Proteins interacs with AT1G31780
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01830

Experimental

two hybrid

FSW = 0.0104

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT4G19640

Predicted

interologs mapping

FSW = 0.0741

Class C:

vacuole

golgi

ARA7 GTP BINDING
AT1G73430

Predicted

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0626

Class C:

vacuole

golgi

SEC34-LIKE FAMILY PROTEIN
AT2G45200

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.3387

Class C:

vacuole

golgi

GOS12 (GOLGI SNARE 12) SNARE BINDING
AT5G15090

Predicted

Affinity Capture-MS

FSW = 0.0274

Class C:

vacuole

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT2G17360

Predicted

interologs mapping

FSW = 0.0033

Class C:

vacuole

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G36530

Predicted

Affinity Capture-MS

two hybrid

FSW = 0.1991

Class C:

vacuole

LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE
AT5G66680

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1242

Class C:

vacuole

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT1G76040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2672

Class C:

vacuole

CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G44610

Predicted

interaction prediction

FSW = 0.1211

Class C:

vacuole

RAB6A GTP BINDING / PROTEIN BINDING
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0963

Class C:

vacuole

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT3G07180

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0650

Class C:

vacuole

GPI TRANSAMIDASE COMPONENT PIG-S-RELATED
AT2G01690

Predicted

two hybrid

interaction prediction

FSW = 0.0050

Class C:

vacuole

BINDING
AT2G30710

Predicted

Synthetic Lethality

Synthetic Lethality

interologs mapping

Phenotypic Enhancement

interaction prediction

FSW = 0.2905

Class C:

vacuole

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G07100

Predicted

Phenotypic Enhancement

FSW = 0.0312

Class C:

golgi

PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT3G24350

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.1012

Class C:

golgi

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT1G71270

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1675

Class C:

golgi

POK (POKY POLLEN TUBE)
AT5G18280

Predicted

Phenotypic Enhancement

FSW = 0.2212

Class C:

golgi

ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE
AT2G13650

Predicted

Phenotypic Enhancement

FSW = 0.0336

Class C:

golgi

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT1G07290

Predicted

interologs mapping

FSW = 0.1287

Class C:

golgi

NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G16780

Predicted

two hybrid

FSW = 0.0094

Unknown

ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) DNA BINDING / PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G74710

Predicted

Affinity Capture-MS

FSW = 0.0322

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT2G44350

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2221

Unknown

ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE
AT3G23940

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2392

Unknown

DEHYDRATASE FAMILY
AT5G25400

Predicted

Affinity Capture-MS

FSW = 0.0296

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT5G56030

Predicted

Affinity Capture-MS

FSW = 0.0146

Unknown

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT3G09840

Predicted

Affinity Capture-MS

FSW = 0.0068

Unknown

CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT1G73230

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2169

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT5G23630

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2324

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT3G51460

Predicted

interologs mapping

FSW = 0.0793

Unknown

RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT1G11890

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1505

Unknown

SEC22 TRANSPORTER
AT1G07670

Predicted

Phenotypic Enhancement

FSW = 0.1444

Unknown

CALCIUM-TRANSPORTING ATPASE
AT4G36490

Predicted

Affinity Capture-Western

FSW = 0.0067

Unknown

SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G52640

Predicted

Synthetic Lethality

synthetic growth defect

Affinity Capture-MS

FSW = 0.0271

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G71820

Predicted

two hybrid

two hybrid

FSW = 0.0204

Unknown

SEC6
AT5G02490

Predicted

two hybrid

FSW = 0.0167

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT1G57720

Predicted

Affinity Capture-MS

FSW = 0.0412

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G09640

Predicted

Affinity Capture-MS

FSW = 0.0146

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT2G47160

Predicted

Affinity Capture-MS

FSW = 0.0111

Unknown

BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT3G12480

Predicted

two hybrid

two hybrid

FSW = 0.0037

Unknown

NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR
AT5G14170

Predicted

two hybrid

two hybrid

FSW = 0.0049

Unknown

CHC1
AT4G34430

Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

Co-purification

co-fractionation

Co-fractionation

FSW = 0.1158

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G52250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1028

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT2G40290

Predicted

Affinity Capture-MS

FSW = 0.1034

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT4G36590

Predicted

Affinity Capture-MS

FSW = 0.1673

Unknown

MADS-BOX PROTEIN (AGL40)
AT2G47210

Predicted

two hybrid

two hybrid

FSW = 0.0087

Unknown

MYB FAMILY TRANSCRIPTION FACTOR
AT2G44950

Predicted

synthetic growth defect

FSW = 0.0407

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.1314

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G10130

Predicted

interologs mapping

FSW = 0.1035

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G05710

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2887

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT1G01020

Predicted

Phenotypic Enhancement

FSW = 0.1109

Unknown

ARV1
AT5G66020

Predicted

Phenotypic Enhancement

FSW = 0.1121

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT5G10330Predicted

Affinity Capture-MS

FSW = 0.0094

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT5G03340

Predicted

Affinity Capture-MS

FSW = 0.0067

Unknown

CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT4G39220

Predicted

Phenotypic Enhancement

FSW = 0.1728

Unknown

ATRER1A
AT1G02090

Predicted

two hybrid

two hybrid

FSW = 0.0076

Unknown

FUS5 (FUSCA 5) MAP KINASE KINASE
AT5G48600

Predicted

two hybrid

two hybrid

FSW = 0.0080

Unknown

ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER
AT4G01270

Predicted

two hybrid

FSW = 0.0161

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G03790

Predicted

two hybrid

FSW = 0.0090

Unknown

HB51 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G01910

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1723

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE
AT1G05785

Predicted

Phenotypic Enhancement

FSW = 0.0761

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G08750

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0680

Unknown

GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT1G20575

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1205

Unknown

DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE
AT1G26450

Predicted

Phenotypic Enhancement

FSW = 0.2131

Unknown

BETA-13-GLUCANASE-RELATED
AT1G05660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2548

Unknown

POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G25260

Predicted

Affinity Capture-MS

two hybrid

co-fractionation

Co-fractionation

Affinity Capture-MS

FSW = 0.1817

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G27320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1506

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G48760

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2120

Unknown

DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G80500

Predicted

Phenotypic Enhancement

FSW = 0.0873

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT2G34770

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2120

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT2G34980

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2222

Unknown

SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT2G46070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1715

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT3G17520

Predicted

Affinity Capture-MS

FSW = 0.0348

Unknown

LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN
AT3G18660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0902

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G50860

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1517

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT4G01400

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0439

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COG4 TRANSPORT (INTERPROIPR013167) PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G461001) HAS 11639 BLAST HITS TO 3936 PROTEINS IN 180 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 206 FUNGI - 141 PLANTS - 11004 VIRUSES - 0 OTHER EUKARYOTES - 286 (SOURCE NCBI BLINK)
AT4G25150

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.0177

Unknown

ACID PHOSPHATASE PUTATIVE
AT5G01640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3130

Unknown

PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5)
AT5G06140

Predicted

two hybrid

FSW = 0.0283

Unknown

SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING
AT5G09740

Predicted

Synthetic Lethality

FSW = 0.0171

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.1159

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G13010

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2144

Unknown

EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G24410

Predicted

Affinity Capture-MS

FSW = 0.0035

Unknown

GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G25030

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3535

Unknown

ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE
AT5G26250

Predicted

Affinity Capture-Western

Co-purification

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.1428

Unknown

SUGAR TRANSPORTER PUTATIVE
AT5G37830

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-purification

Affinity Capture-MS

FSW = 0.2302

Unknown

OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.0768

Unknown

ORMDL FAMILY PROTEIN
AT5G44830

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1252

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G52210

Predicted

Synthetic Lethality

interologs mapping

Phenotypic Enhancement

interaction prediction

FSW = 0.1950

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G59850Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2455

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AF)
AT1G69640

Predicted

Phenotypic Enhancement

FSW = 0.1416

Unknown

SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT1G74310

Predicted

Affinity Capture-MS

FSW = 0.0142

Unknown

ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G79990

Predicted

Phenotypic Enhancement

FSW = 0.1394

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT2G22530

Predicted

Phenotypic Enhancement

FSW = 0.1938

Unknown

CATALYTIC/ TRANSFERASE
AT3G12180

Predicted

Phenotypic Enhancement

FSW = 0.2467

Unknown

CORNICHON FAMILY PROTEIN
AT4G26550

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2214

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK)
AT4G34450

Predicted

Synthetic Lethality

FSW = 0.0611

Unknown

COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE
AT5G27970Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1850

Unknown

BINDING
AT3G44340

Predicted

interologs mapping

FSW = 0.0663

Unknown

CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT3G04080

Predicted

interologs mapping

FSW = 0.1555

Unknown

ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE
AT3G03180

Predicted

interologs mapping

FSW = 0.0603

Unknown

GOT1-LIKE FAMILY PROTEIN
AT2G18240

Predicted

interologs mapping

FSW = 0.1458

Unknown

RER1 PROTEIN PUTATIVE
AT1G52360

Predicted

interologs mapping

FSW = 0.1109

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G12340

Predicted

interologs mapping

FSW = 0.1731

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK)
AT1G09460

Predicted

interologs mapping

FSW = 0.1611

Unknown

GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED
AT1G14290

Predicted

interologs mapping

FSW = 0.1090

Unknown

SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT1G55255Predicted

synthetic growth defect

FSW = 0.0203

Unknown

SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT3G54630

Predicted

two hybrid

interaction prediction

FSW = 0.0121

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454