Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G31780 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s Conserved oligomeric complex COG6 (InterProIPR010490) Has 281 Blast hits to 279 proteins in 131 species Archae - 0 Bacteria - 2 Metazoa - 132 Fungi - 106 Plants - 21 Viruses - 0 Other Eukaryotes - 20 (source NCBI BLink) )
108 Proteins interacs with AT1G31780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01830 | Experimentaltwo hybrid | FSW = 0.0104
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT4G19640 | Predictedinterologs mapping | FSW = 0.0741
| Class C:vacuolegolgi | ARA7 GTP BINDING |
AT1G73430 | PredictedSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0626
| Class C:vacuolegolgi | SEC34-LIKE FAMILY PROTEIN |
AT2G45200 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.3387
| Class C:vacuolegolgi | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT5G15090 | PredictedAffinity Capture-MS | FSW = 0.0274
| Class C:vacuole | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT2G17360 | Predictedinterologs mapping | FSW = 0.0033
| Class C:vacuole | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G36530 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.1991
| Class C:vacuole | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT5G66680 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1242
| Class C:vacuole | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G76040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2672
| Class C:vacuole | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G44610 | Predictedinteraction prediction | FSW = 0.1211
| Class C:vacuole | RAB6A GTP BINDING / PROTEIN BINDING |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0963
| Class C:vacuole | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT3G07180 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0650
| Class C:vacuole | GPI TRANSAMIDASE COMPONENT PIG-S-RELATED |
AT2G01690 | Predictedtwo hybridinteraction prediction | FSW = 0.0050
| Class C:vacuole | BINDING |
AT2G30710 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.2905
| Class C:vacuole | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G07100 | PredictedPhenotypic Enhancement | FSW = 0.0312
| Class C:golgi | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G24350 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.1012
| Class C:golgi | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT1G71270 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1675
| Class C:golgi | POK (POKY POLLEN TUBE) |
AT5G18280 | PredictedPhenotypic Enhancement | FSW = 0.2212
| Class C:golgi | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT2G13650 | PredictedPhenotypic Enhancement | FSW = 0.0336
| Class C:golgi | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT1G07290 | Predictedinterologs mapping | FSW = 0.1287
| Class C:golgi | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G16780 | Predictedtwo hybrid | FSW = 0.0094
| Unknown | ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) DNA BINDING / PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT1G74710 | PredictedAffinity Capture-MS | FSW = 0.0322
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT2G44350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2221
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT3G23940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2392
| Unknown | DEHYDRATASE FAMILY |
AT5G25400 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT3G09840 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT1G73230 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2169
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT5G23630 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2324
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT3G51460 | Predictedinterologs mapping | FSW = 0.0793
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT1G11890 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1505
| Unknown | SEC22 TRANSPORTER |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.1444
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT4G36490 | PredictedAffinity Capture-Western | FSW = 0.0067
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640 | PredictedSynthetic Lethalitysynthetic growth defectAffinity Capture-MS | FSW = 0.0271
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G71820 | Predictedtwo hybridtwo hybrid | FSW = 0.0204
| Unknown | SEC6 |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT1G57720 | PredictedAffinity Capture-MS | FSW = 0.0412
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G47160 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT3G12480 | Predictedtwo hybridtwo hybrid | FSW = 0.0037
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G14170 | Predictedtwo hybridtwo hybrid | FSW = 0.0049
| Unknown | CHC1 |
AT4G34430 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridCo-purificationco-fractionationCo-fractionation | FSW = 0.1158
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G52250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1028
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.1034
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G36590 | PredictedAffinity Capture-MS | FSW = 0.1673
| Unknown | MADS-BOX PROTEIN (AGL40) |
AT2G47210 | Predictedtwo hybridtwo hybrid | FSW = 0.0087
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.0407
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.1314
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G10130 | Predictedinterologs mapping | FSW = 0.1035
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G05710 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2887
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G01020 | PredictedPhenotypic Enhancement | FSW = 0.1109
| Unknown | ARV1 |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.1121
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT5G10330 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT5G03340 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT4G39220 | PredictedPhenotypic Enhancement | FSW = 0.1728
| Unknown | ATRER1A |
AT1G02090 | Predictedtwo hybridtwo hybrid | FSW = 0.0076
| Unknown | FUS5 (FUSCA 5) MAP KINASE KINASE |
AT5G48600 | Predictedtwo hybridtwo hybrid | FSW = 0.0080
| Unknown | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER |
AT4G01270 | Predictedtwo hybrid | FSW = 0.0161
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G03790 | Predictedtwo hybrid | FSW = 0.0090
| Unknown | HB51 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT1G01910 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1723
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G05785 | PredictedPhenotypic Enhancement | FSW = 0.0761
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G08750 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0680
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G20575 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1205
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.2131
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G05660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2548
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G25260 | PredictedAffinity Capture-MStwo hybridco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.1817
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G27320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1506
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G48760 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2120
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G80500 | PredictedPhenotypic Enhancement | FSW = 0.0873
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G34770 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2120
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G34980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2222
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G46070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1715
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G17520 | PredictedAffinity Capture-MS | FSW = 0.0348
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT3G18660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0902
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G50860 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1517
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G01400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0439
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COG4 TRANSPORT (INTERPROIPR013167) PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G461001) HAS 11639 BLAST HITS TO 3936 PROTEINS IN 180 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 206 FUNGI - 141 PLANTS - 11004 VIRUSES - 0 OTHER EUKARYOTES - 286 (SOURCE NCBI BLINK) |
AT4G25150 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0177
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT5G01640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3130
| Unknown | PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5) |
AT5G06140 | Predictedtwo hybrid | FSW = 0.0283
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
AT5G09740 | PredictedSynthetic Lethality | FSW = 0.0171
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.1159
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G13010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2144
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G24410 | PredictedAffinity Capture-MS | FSW = 0.0035
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G25030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3535
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
AT5G26250 | PredictedAffinity Capture-WesternCo-purificationAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1428
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G37830 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.2302
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0768
| Unknown | ORMDL FAMILY PROTEIN |
AT5G44830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1252
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G52210 | PredictedSynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.1950
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G59850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2455
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
AT1G69640 | PredictedPhenotypic Enhancement | FSW = 0.1416
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G74310 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.1394
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.1938
| Unknown | CATALYTIC/ TRANSFERASE |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.2467
| Unknown | CORNICHON FAMILY PROTEIN |
AT4G26550 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2214
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK) |
AT4G34450 | PredictedSynthetic Lethality | FSW = 0.0611
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT5G27970 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1850
| Unknown | BINDING |
AT3G44340 | Predictedinterologs mapping | FSW = 0.0663
| Unknown | CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT3G04080 | Predictedinterologs mapping | FSW = 0.1555
| Unknown | ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE |
AT3G03180 | Predictedinterologs mapping | FSW = 0.0603
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT2G18240 | Predictedinterologs mapping | FSW = 0.1458
| Unknown | RER1 PROTEIN PUTATIVE |
AT1G52360 | Predictedinterologs mapping | FSW = 0.1109
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G12340 | Predictedinterologs mapping | FSW = 0.1731
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G09460 | Predictedinterologs mapping | FSW = 0.1611
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G14290 | Predictedinterologs mapping | FSW = 0.1090
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0203
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT3G54630 | Predictedtwo hybridinteraction prediction | FSW = 0.0121
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454