Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G48600 - ( ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP binding / transporter )
15 Proteins interacs with AT5G48600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02090 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT1G61000 | Predictedtwo hybridinteraction prediction | FSW = 0.0632
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
AT1G31780 | Predictedtwo hybridtwo hybrid | FSW = 0.0080
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT3G20550 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | DDL (DAWDLE) |
AT3G48750 | Predictedbiochemicalbiochemicalinteraction prediction | FSW = 0.0084
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G32590 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3445
| Unknown | INVOLVED IN MITOSIS MITOTIC CELL CYCLE LOCATED IN NUCLEUS CHLOROPLAST EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BARREN (INTERPROIPR008418) HAS 340 BLAST HITS TO 330 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 135 FUNGI - 102 PLANTS - 21 VIRUSES - 1 OTHER EUKARYOTES - 81 (SOURCE NCBI BLINK) |
AT4G26840 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0075
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G57060 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSin vivoCo-expression | FSW = 0.2694
| Unknown | BINDING |
AT5G62410 | PredictedAffinity Capture-MSin vitroin vivointerologs mappingAffinity Capture-Western | FSW = 0.4058
| Unknown | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) TRANSPORTER |
AT1G60620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0199
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G27170 | Predictedtwo hybridinteraction prediction | FSW = 0.0604
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT3G47460 | PredictedReconstituted ComplexCo-purificationAffinity Capture-WesternAffinity Capture-MSCo-expression | FSW = 0.2582
| Unknown | ATSMC2 TRANSPORTER |
AT5G37630 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4762
| Unknown | EMB2656 (EMBRYO DEFECTIVE 2656) BINDING |
AT1G07270 | Predictedinterologs mapping | FSW = 0.0722
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT4G29910 | Predictedinterologs mapping | FSW = 0.0471
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454