Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G20550 - ( DDL (DAWDLE) )
76 Proteins interacs with AT3G20550Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G01040 | Experimentalpull down | FSW = 0.0065
| Class A:nucleusClass B:plastid | DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III |
AT1G79550 | Predictedco-fractionationCo-fractionation | FSW = 0.1507
| Class C:plastidnucleus | PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE |
AT3G14420 | PredictedCo-purification | FSW = 0.0313
| Class C:plastidnucleus | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT3G03920 | Predictedco-fractionationCo-fractionation | FSW = 0.0127
| Class C:plastidnucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT3G62030 | Predictedco-fractionationCo-fractionation | FSW = 0.0381
| Class C:plastidnucleus | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4) |
AT3G47520 | PredictedSynthetic Rescue | FSW = 0.0093
| Class C:plastid | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0314
| Class C:plastid | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT5G16150 | PredictedAffinity Capture-MS | FSW = 0.0249
| Class C:plastid | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G51070 | PredictedAffinity Capture-MS | FSW = 0.0281
| Class C:plastid | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G05560 | Predictedco-fractionationCo-fractionation | FSW = 0.0739
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT1G75560 | PredictedPhenotypic Suppression | FSW = 0.0161
| Class C:nucleus | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G77950 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0805
| Class C:nucleus | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
AT1G04510 | PredictedCo-purification | FSW = 0.0046
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G60410 | PredictedAffinity Capture-MS | FSW = 0.0488
| Class C:nucleus | SIZ1 DNA BINDING / SUMO LIGASE |
AT1G21190 | Predictedco-fractionationCo-fractionation | FSW = 0.0218
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G36130 | Predictedco-fractionationCo-fractionation | FSW = 0.0188
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT3G58730 | Predictedco-fractionationCo-fractionation | FSW = 0.0284
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
AT3G62150 | PredictedPhenotypic Suppression | FSW = 0.0096
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G28715 | PredictedSynthetic Lethality | FSW = 0.0359
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0487
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G19860 | Predictedco-fractionationCo-fractionation | FSW = 0.0788
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT4G29210 | PredictedSynthetic Lethality | FSW = 0.0543
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT5G58800 | Predictedco-fractionationCo-fractionation | FSW = 0.1069
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G17750 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G19690 | PredictedCo-purificationPhenotypic Enhancementinterologs mapping | FSW = 0.4036
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT1G77210 | Predictedbiochemical | FSW = 0.0200
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT2G30160 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.0257
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT4G10040 | PredictedPhenotypic Suppression | FSW = 0.0188
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT3G09590 | PredictedPhenotypic Suppression | FSW = 0.0253
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G66590 | Predictedco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.0277
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.0094
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G07140 | Predictedsynthetic growth defect | FSW = 0.0212
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT5G04940 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | SUVH1 (SU(VAR)3-9 HOMOLOG 1) HISTONE METHYLTRANSFERASE |
AT3G12980 | PredictedAffinity Capture-Western | FSW = 0.0403
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G22860 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT3G57870 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT1G07880 | PredictedPhenotypic Enhancement | FSW = 0.0275
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G11530 | PredictedPhenotypic Suppression | FSW = 0.0285
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20696 | Predictedsynthetic growth defect | FSW = 0.0637
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G22550 | Predictedco-fractionationCo-fractionation | FSW = 0.0530
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G29800 | Predictedco-fractionationCo-fractionation | FSW = 0.1642
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT1G55255 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0076
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT1G74310 | PredictedPhenotypic Suppression | FSW = 0.0115
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G28060 | PredictedPhenotypic Suppression | FSW = 0.0281
| Unknown | PROTEIN KINASE-RELATED |
AT2G31260 | Predictedco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.0474
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G32220 | Predictedco-fractionationCo-fractionation | FSW = 0.0457
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT2G35390 | PredictedColocalization | FSW = 0.0266
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G47090 | PredictedSynthetic Lethalityinterologs mappingco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.0310
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G03080 | PredictedSynthetic Lethality | FSW = 0.0556
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G11530 | PredictedPhenotypic Suppression | FSW = 0.0184
| Unknown | VACUOLAR PROTEIN SORTING 55 FAMILY PROTEIN / VPS55 FAMILY PROTEIN |
AT3G15470 | Predictedco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.0180
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G18520 | PredictedPhenotypic Suppression | FSW = 0.0038
| Unknown | HDA15 HISTONE DEACETYLASE |
AT3G47610 | PredictedSynthetic Rescue | FSW = 0.0327
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G44830 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT3G24010 | PredictedPhenotypic Suppression | FSW = 0.0177
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G55020 | PredictedPhenotypic Suppression | FSW = 0.0416
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G62770 | Predictedco-fractionationCo-fractionation | FSW = 0.0404
| Unknown | ATATG18A |
AT3G62930 | Predictedco-fractionationCo-fractionationsynthetic growth defect | FSW = 0.0330
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G12790 | PredictedPhenotypic Suppression | FSW = 0.0188
| Unknown | ATP-BINDING FAMILY PROTEIN |
AT4G22140 | Predictedsynthetic growth defectPhenotypic Suppression | FSW = 0.0154
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G25850 | Predictedco-fractionationCo-fractionation | FSW = 0.0454
| Unknown | ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B) OXYSTEROL BINDING |
AT5G05070 | PredictedPhenotypic Suppression | FSW = 0.0226
| Unknown | ZINC ION BINDING |
AT5G07950 | Predictedsynthetic growth defect | FSW = 0.1158
| Unknown | UNKNOWN PROTEIN |
AT5G14850 | Predictedtwo hybridPhenotypic Suppression | FSW = 0.0359
| Unknown | MANNOSYLTRANSFERASE PUTATIVE |
AT5G16040 | PredictedColocalization | FSW = 0.0260
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G19660 | PredictedPhenotypic Suppression | FSW = 0.0214
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G42190 | Predictedco-fractionationCo-fractionation | FSW = 0.0335
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G49840 | Predictedco-fractionationCo-fractionation | FSW = 0.0465
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G49930 | PredictedSynthetic Lethality | FSW = 0.0686
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G61330 | Predictedco-fractionationCo-fractionation | FSW = 0.0851
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT3G56150 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT4G10320 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE |
AT5G48600 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER |
AT1G02690 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT1G16710 | Predictedin vitroin vivo | FSW = 0.0494
| Unknown | HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT1G79000 | Predictedin vitroin vivo | FSW = 0.0198
| Unknown | HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454