Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G20550 - ( DDL (DAWDLE) )

76 Proteins interacs with AT3G20550
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G01040

Experimental

pull down

FSW = 0.0065

Class A:

nucleus

Class B:

plastid

DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III
AT1G79550

Predicted

co-fractionation

Co-fractionation

FSW = 0.1507

Class C:

plastid

nucleus

PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE
AT3G14420

Predicted

Co-purification

FSW = 0.0313

Class C:

plastid

nucleus

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT3G03920

Predicted

co-fractionation

Co-fractionation

FSW = 0.0127

Class C:

plastid

nucleus

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G62030

Predicted

co-fractionation

Co-fractionation

FSW = 0.0381

Class C:

plastid

nucleus

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4)
AT3G47520

Predicted

Synthetic Rescue

FSW = 0.0093

Class C:

plastid

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590

Predicted

Synthetic Lethality

FSW = 0.0314

Class C:

plastid

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT5G16150

Predicted

Affinity Capture-MS

FSW = 0.0249

Class C:

plastid

PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G51070

Predicted

Affinity Capture-MS

FSW = 0.0281

Class C:

plastid

ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G05560

Predicted

co-fractionation

Co-fractionation

FSW = 0.0739

Class C:

nucleus

60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT1G75560

Predicted

Phenotypic Suppression

FSW = 0.0161

Class C:

nucleus

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT1G77950

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.0805

Class C:

nucleus

AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR
AT1G04510

Predicted

Co-purification

FSW = 0.0046

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G60410

Predicted

Affinity Capture-MS

FSW = 0.0488

Class C:

nucleus

SIZ1 DNA BINDING / SUMO LIGASE
AT1G21190

Predicted

co-fractionation

Co-fractionation

FSW = 0.0218

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G36130

Predicted

co-fractionation

Co-fractionation

FSW = 0.0188

Unknown

60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT3G58730

Predicted

co-fractionation

Co-fractionation

FSW = 0.0284

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT3G62150

Predicted

Phenotypic Suppression

FSW = 0.0096

Unknown

PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G28715

Predicted

Synthetic Lethality

FSW = 0.0359

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0487

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G19860

Predicted

co-fractionation

Co-fractionation

FSW = 0.0788

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT4G29210

Predicted

Synthetic Lethality

FSW = 0.0543

Unknown

GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
AT5G58800

Predicted

co-fractionation

Co-fractionation

FSW = 0.1069

Unknown

QUINONE REDUCTASE FAMILY PROTEIN
AT3G17750

Predicted

Affinity Capture-MS

FSW = 0.0263

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G19690

Predicted

Co-purification

Phenotypic Enhancement

interologs mapping

FSW = 0.4036

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT1G77210

Predicted

biochemical

FSW = 0.0200

Unknown

SUGAR TRANSPORTER PUTATIVE
AT2G30160

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Co-purification

FSW = 0.0257

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G10040

Predicted

Phenotypic Suppression

FSW = 0.0188

Unknown

CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT3G09590

Predicted

Phenotypic Suppression

FSW = 0.0253

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G66590

Predicted

co-fractionation

Co-fractionation

Synthetic Lethality

FSW = 0.0277

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT2G19980

Predicted

Phenotypic Suppression

FSW = 0.0094

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G07140

Predicted

synthetic growth defect

FSW = 0.0212

Unknown

GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT5G04940

Predicted

Affinity Capture-MS

FSW = 0.0127

Unknown

SUVH1 (SU(VAR)3-9 HOMOLOG 1) HISTONE METHYLTRANSFERASE
AT3G12980

Predicted

Affinity Capture-Western

FSW = 0.0403

Unknown

HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G22860

Predicted

Affinity Capture-MS

FSW = 0.0165

Unknown

TIF3C2 TRANSLATION INITIATION FACTOR
AT3G57870

Predicted

Affinity Capture-MS

FSW = 0.0158

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT1G07880

Predicted

Phenotypic Enhancement

FSW = 0.0275

Unknown

ATMPK13 MAP KINASE/ KINASE
AT1G11530

Predicted

Phenotypic Suppression

FSW = 0.0285

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20696

Predicted

synthetic growth defect

FSW = 0.0637

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G22550

Predicted

co-fractionation

Co-fractionation

FSW = 0.0530

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G29800

Predicted

co-fractionation

Co-fractionation

FSW = 0.1642

Unknown

PHOSPHOINOSITIDE BINDING / ZINC ION BINDING
AT1G55255Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.0076

Unknown

PHOSPHOINOSITIDE BINDING / ZINC ION BINDING
AT1G74310

Predicted

Phenotypic Suppression

FSW = 0.0115

Unknown

ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G28060

Predicted

Phenotypic Suppression

FSW = 0.0281

Unknown

PROTEIN KINASE-RELATED
AT2G31260

Predicted

co-fractionation

Co-fractionation

Synthetic Lethality

FSW = 0.0474

Unknown

APG9 (AUTOPHAGY 9)
AT2G32220

Predicted

co-fractionation

Co-fractionation

FSW = 0.0457

Unknown

60S RIBOSOMAL PROTEIN L27 (RPL27A)
AT2G35390

Predicted

Colocalization

FSW = 0.0266

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G47090

Predicted

Synthetic Lethality

interologs mapping

co-fractionation

Co-fractionation

Synthetic Lethality

FSW = 0.0310

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G03080

Predicted

Synthetic Lethality

FSW = 0.0556

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT3G11530

Predicted

Phenotypic Suppression

FSW = 0.0184

Unknown

VACUOLAR PROTEIN SORTING 55 FAMILY PROTEIN / VPS55 FAMILY PROTEIN
AT3G15470

Predicted

co-fractionation

Co-fractionation

Synthetic Lethality

FSW = 0.0180

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT3G18520

Predicted

Phenotypic Suppression

FSW = 0.0038

Unknown

HDA15 HISTONE DEACETYLASE
AT3G47610

Predicted

Synthetic Rescue

FSW = 0.0327

Unknown

TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G44830

Predicted

Affinity Capture-MS

FSW = 0.0111

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT3G24010

Predicted

Phenotypic Suppression

FSW = 0.0177

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G55020

Predicted

Phenotypic Suppression

FSW = 0.0416

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G62770

Predicted

co-fractionation

Co-fractionation

FSW = 0.0404

Unknown

ATATG18A
AT3G62930

Predicted

co-fractionation

Co-fractionation

synthetic growth defect

FSW = 0.0330

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G12790

Predicted

Phenotypic Suppression

FSW = 0.0188

Unknown

ATP-BINDING FAMILY PROTEIN
AT4G22140

Predicted

synthetic growth defect

Phenotypic Suppression

FSW = 0.0154

Unknown

DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G25850

Predicted

co-fractionation

Co-fractionation

FSW = 0.0454

Unknown

ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B) OXYSTEROL BINDING
AT5G05070

Predicted

Phenotypic Suppression

FSW = 0.0226

Unknown

ZINC ION BINDING
AT5G07950

Predicted

synthetic growth defect

FSW = 0.1158

Unknown

UNKNOWN PROTEIN
AT5G14850

Predicted

two hybrid

Phenotypic Suppression

FSW = 0.0359

Unknown

MANNOSYLTRANSFERASE PUTATIVE
AT5G16040

Predicted

Colocalization

FSW = 0.0260

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G19660

Predicted

Phenotypic Suppression

FSW = 0.0214

Unknown

S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G42190

Predicted

co-fractionation

Co-fractionation

FSW = 0.0335

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G49840

Predicted

co-fractionation

Co-fractionation

FSW = 0.0465

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G49930

Predicted

Synthetic Lethality

FSW = 0.0686

Unknown

EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G61330

Predicted

co-fractionation

Co-fractionation

FSW = 0.0851

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT3G56150

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT4G10320

Predicted

Affinity Capture-MS

FSW = 0.0205

Unknown

ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE
AT5G48600

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER
AT1G02690

Predicted

Affinity Capture-MS

FSW = 0.0038

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT1G16710

Predicted

in vitro

in vivo

FSW = 0.0494

Unknown

HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT1G79000

Predicted

in vitro

in vivo

FSW = 0.0198

Unknown

HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454