Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G58730 - ( vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) )
37 Proteins interacs with AT3G58730| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G78900
   | Predictedco-fractionationCo-fractionationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.2400
| Class C:vacuoleplasma membrane | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT3G42050
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2874
| Class C:vacuoleplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
| AT1G76030
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2259
| Class C:vacuoleplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
| AT1G12840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2874
| Class C:vacuoleplasma membrane | DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT2G44610
| Predictedinteraction prediction | FSW = 0.0309
| Class C:vacuoleplasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
| AT4G02620
| Predictedco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinterologs mappinginteraction prediction | FSW = 0.4354
| Class C:vacuoleplasma membrane | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
| AT3G01390
| PredictedAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.2553
| Class C:vacuoleplasma membrane | VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
| AT2G21410
| Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.2744
| Class C:vacuole | VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE |
| AT1G20260
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0944
| Class C:vacuole | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT2G46560
| PredictedAffinity Capture-Western | FSW = 0.2178
| Class C:vacuole | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0075
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G64200
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3899
| Class C:vacuole | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT5G59880
| Predictedinterologs mapping | FSW = 0.0211
| Class C:plasma membrane | ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) ACTIN BINDING |
| AT1G77290
| Predictedtwo hybridtwo hybrid | FSW = 0.0667
| Class C:plasma membrane | TETRACHLORO-P-HYDROQUINONE REDUCTIVE DEHALOGENASE-RELATED |
| AT4G19690
| Predictedco-fractionationCo-fractionation | FSW = 0.0456
| Class C:plasma membrane | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
| AT3G20550
| Predictedco-fractionationCo-fractionation | FSW = 0.0284
| Unknown | DDL (DAWDLE) |
| AT5G24360
| Predictedtwo hybrid | FSW = 0.0269
| Unknown | IRE1-1 (INOSITOL REQUIRING 1-1) ATP BINDING / ENDORIBONUCLEASE PRODUCING 5-PHOSPHOMONOESTERS / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G20140
| PredictedAffinity Capture-Western | FSW = 0.0631
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G34390
| Predictedtwo hybrid | FSW = 0.0129
| Unknown | XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
| AT3G15220
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0160
| Unknown | PROTEIN KINASE PUTATIVE |
| AT1G53165
| PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT2G22290
| PredictedSynthetic Lethality | FSW = 0.0445
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
| AT2G31970
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0290
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
| AT5G48070
| Predictedco-fractionationCo-fractionation | FSW = 0.0211
| Unknown | XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
| AT3G15150
| Predictedtwo hybrid | FSW = 0.0571
| Unknown | ZINC ION BINDING |
| AT3G08560
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.3582
| Unknown | VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT1G53880 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
| AT1G80410
| Predictedsynthetic growth defect | FSW = 0.0196
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT2G02760
| Predictedsynthetic growth defect | FSW = 0.0431
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
| AT2G16950
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0042
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
| AT3G07300
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0495
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
| AT5G06140
| Predictedtwo hybrid | FSW = 0.1023
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
| AT5G10260
| PredictedSynthetic Lethality | FSW = 0.0386
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
| AT5G13780
| Predictedsynthetic growth defect | FSW = 0.0373
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
| AT5G42190
| PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0436
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G14400
| Predictedsynthetic growth defect | FSW = 0.0466
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
| AT1G72340
| Predictedinteraction prediction | FSW = 0.0250
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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