Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G78900 - ( VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP binding / hydrogen ion transporting ATP synthase rotational mechanism / hydrolase acting on acid anhydrides catalyzing transmembrane movement of substances / proton-transporting ATPase rotational mechanism )
62 Proteins interacs with AT1G78900| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G48750
   | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0122
| Class A:plasma membraneClass B:vacuoleplastidnucleuscytosolClass D:cytosol (p = 0.67) | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT5G35410
| Experimentalinteraction detection method | FSW = 0.0509
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
| AT5G08670
| PredictedAffinity Capture-MS | FSW = 0.0368
| Class C:vacuoleplastidplasma membrane | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
| AT3G42050
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2180
| Class C:vacuoleplastidplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
| AT1G76030
| PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-Westerntwo hybridco-fractionationCo-fractionationAffinity Capture-MSinteraction predictionEnriched domain pairGene neighbors method | FSW = 0.1711
| Class C:vacuoleplastidplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
| AT2G21410
| Predictedtwo hybridco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybridtwo hybridAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MSinteraction prediction | FSW = 0.2885
| Class C:vacuoleplastid | VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE |
| AT1G20260
| Predictedco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-fractionationtwo hybridEnriched domain pairGene neighbors method | FSW = 0.0821
| Class C:vacuoleplastid | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT1G12840
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.1607
| Class C:vacuoleplasma membrane | DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT3G01390
| PredictedAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.1667
| Class C:vacuoleplasma membrane | VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
| AT4G02620
| Predictedco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinteraction prediction | FSW = 0.2404
| Class C:vacuoleplasma membrane | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
| AT3G58730
| Predictedco-fractionationCo-fractionationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.2400
| Class C:vacuoleplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
| AT3G28715
| PredictedAffinity Capture-Western | FSW = 0.0637
| Class C:vacuoleplasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
| AT3G28710
| PredictedAffinity Capture-Western | FSW = 0.0616
| Class C:vacuoleplasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
| AT1G19910
| PredictedAffinity Capture-Western | FSW = 0.0182
| Class C:vacuoleplasma membrane | AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT4G17140 | PredictedAffinity Capture-MS | FSW = 0.0287
| Class C:vacuole | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PLECKSTRIN HOMOLOGY (INTERPROIPR001849) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHOINOSITIDE BINDING (TAIRAT1G480902) HAS 1924 BLAST HITS TO 1182 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 16 METAZOA - 911 FUNGI - 304 PLANTS - 271 VIRUSES - 0 OTHER EUKARYOTES - 422 (SOURCE NCBI BLINK) |
| AT2G46560
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1717
| Class C:vacuole | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G64200
| PredictedAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.2616
| Class C:vacuole | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT2G43750
| PredictedSynthetic Rescue | FSW = 0.0652
| Class C:plastid | OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE |
| AT3G59760
| Predictedinteraction prediction | FSW = 0.0329
| Class C:plastid | OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE |
| AT1G48090 | PredictedAffinity Capture-MS | FSW = 0.0287
| Class C:plastid | PHOSPHOINOSITIDE BINDING |
| AT1G11890
| PredictedPhenotypic Enhancement | FSW = 0.0256
| Class C:plasma membrane | SEC22 TRANSPORTER |
| AT5G04990
| Predictedtwo hybridtwo hybrid | FSW = 0.0077
| Unknown | SAD1/UNC-84 PROTEIN-RELATED |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT1G20140
| PredictedAffinity Capture-Western | FSW = 0.0307
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G03190
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0698
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
| AT4G14540
| Predictedinteraction prediction | FSW = 0.0335
| Unknown | NF-YB3 (NUCLEAR FACTOR Y SUBUNIT B3) TRANSCRIPTION FACTOR |
| AT2G18760
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0201
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT5G47640
| PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | NF-YB2 (NUCLEAR FACTOR Y SUBUNIT B2) TRANSCRIPTION FACTOR |
| AT2G13570
| PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | NF-YB7 (NUCLEAR FACTOR Y SUBUNIT B7) TRANSCRIPTION FACTOR |
| AT3G11460
| PredictedGene fusion method | FSW = 0.0205
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
| AT2G31970
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0239
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
| AT1G79750
| PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
| AT3G05210
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0377
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
| AT2G12550
| Predictedtwo hybridtwo hybrid | FSW = 0.0117
| Unknown | UBIQUITIN-ASSOCIATED (UBA)/TS-N DOMAIN-CONTAINING PROTEIN |
| AT1G64550
| PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | ATGCN3 TRANSPORTER |
| AT1G08780
| PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
| AT1G29990
| PredictedPhenotypic Enhancement | FSW = 0.0392
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
| AT1G30580
| PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | GTP BINDING |
| AT1G60620
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0213
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT2G32600
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0233
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT3G08560
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.2404
| Unknown | VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT3G18860
| PredictedPhenotypic Enhancement | FSW = 0.0203
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G22142
| PredictedAffinity Capture-MS | FSW = 0.0918
| Unknown | STRUCTURAL CONSTITUENT OF CELL WALL |
| AT3G22480
| PredictedPhenotypic Enhancement | FSW = 0.0417
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
| AT3G53570
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0117
| Unknown | AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G58560
| Predictedsynthetic growth defect | FSW = 0.0249
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT5G08560
| PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G10260
| PredictedPhenotypic Enhancement | FSW = 0.0463
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
| AT5G10960
| PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0262
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
| AT5G14050
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0091
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G16750
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0110
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
| AT5G42190
| PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0191
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G44635
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0045
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
| AT5G48120
| PredictedAffinity Capture-MS | FSW = 0.0721
| Unknown | BINDING |
| AT5G63140
| PredictedSynthetic Lethality | FSW = 0.0330
| Unknown | ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29) ACID PHOSPHATASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G67320
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0685
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
| AT5G02530
| PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT1G53570
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0107
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G17270
| PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
| AT1G15920
| PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0217
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
| AT1G14230
| Predictedinterologs mapping | FSW = 0.0364
| Unknown | NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN / GDA1/CD39 FAMILY PROTEIN |
| AT2G32070
| Predictedinteraction prediction | FSW = 0.0566
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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