Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43750 - ( OASB (O-ACETYLSERINE (THIOL) LYASE B) cysteine synthase )
25 Proteins interacs with AT2G43750Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G56760 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.2106
| Class B:plastidmitochondrioncytosolClass D:cytosol (p = 0.67) | ATSERAT11 (ARABIDOPSIS THALIANA SERINE ACETYLTRANSFERASE 11) SERINE O-ACETYLTRANSFERASE |
AT3G61440 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3750
| Class C:plastidmitochondrion | CYSC1 (CYSTEINE SYNTHASE C1) L-3-CYANOALANINE SYNTHASE/ CYSTEINE SYNTHASE |
AT3G59760 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1856
| Class C:plastidmitochondrion | OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE |
AT4G14880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4228
| Class C:plastid | OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE |
AT1G20010 | PredictedAffinity Capture-MS | FSW = 0.0204
| Class C:plastid | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G78900 | PredictedSynthetic Rescue | FSW = 0.0652
| Class C:plastid | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0166
| Class C:plastid | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G20260 | PredictedAffinity Capture-MS | FSW = 0.0187
| Class C:plastid | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT4G37910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0095
| Class C:mitochondrion | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT3G48750 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G11680 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT5G28020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3494
| Unknown | CYSD2 (CYSTEINE SYNTHASE D2) CATALYTIC/ CYSTEINE SYNTHASE/ PYRIDOXAL PHOSPHATE BINDING |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0170
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | SGP2 GTP BINDING |
AT1G17590 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR |
AT1G07370 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G58560 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G44340 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G09080 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | BIP3 ATP BINDING |
AT1G11660 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT2G03820 | PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0103
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT3G04940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3712
| Unknown | CYSD1 (CYSTEINE SYNTHASE D1) CYSTEINE SYNTHASE |
AT5G28030 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3214
| Unknown | CYSTEINE SYNTHASE PUTATIVE / O-ACETYLSERINE (THIOL)-LYASE PUTATIVE / O-ACETYLSERINE SULFHYDRYLASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454