Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G03820 - ( nonsense-mediated mRNA decay NMD3 family protein )
42 Proteins interacs with AT2G03820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14880 | PredictedAffinity Capture-MS | FSW = 0.0426
| Unknown | OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE |
AT3G25520 | PredictedAffinity Capture-MS | FSW = 0.0881
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09200 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0492
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT1G27400 | PredictedAffinity Capture-MS | FSW = 0.0470
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
AT2G47610 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1007
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.1218
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT1G43170 | PredictedAffinity Capture-MS | FSW = 0.0622
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G66580 | PredictedAffinity Capture-Westerninterologs mappingSynthetic RescueAffinity Capture-Westerninterologs mappingSynthetic Rescueinteraction prediction | FSW = 0.1164
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT1G14320 | PredictedSynthetic RescueAffinity Capture-Westerninterologs mappingSynthetic Rescue | FSW = 0.0359
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G13440 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.1232
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT2G36620 | PredictedAffinity Capture-MS | FSW = 0.0340
| Unknown | RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G43750 | PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE |
AT3G59760 | Predictedinteraction prediction | FSW = 0.0470
| Unknown | OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE |
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.0838
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT2G37190 | PredictedAffinity Capture-Western | FSW = 0.1455
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT1G16300 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G47010 | Predictedinteraction predictiontwo hybridtwo hybrid | FSW = 0.0167
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT3G53430 | PredictedAffinity Capture-Western | FSW = 0.0816
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
AT2G42520 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.1093
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | SGP2 GTP BINDING |
AT5G54840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0186
| Unknown | SGP1 GTP BINDING |
AT3G16810 | Predictedco-fractionationCo-fractionation | FSW = 0.1479
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G55920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0490
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G24500 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0639
| Unknown | FZF TRANSCRIPTION FACTOR |
AT3G53020 | PredictedAffinity Capture-MS | FSW = 0.0980
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G17020 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0230
| Unknown | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT1G50920 | PredictedAffinity Capture-MS | FSW = 0.0924
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.1157
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G17130 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0073
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G67190 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | F-BOX FAMILY PROTEIN |
AT2G27200 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinterologs mappingSynthetic Rescueinteraction prediction | FSW = 0.2327
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G36930 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0858
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT5G09900 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT3G03110 | PredictedAffinity Capture-WesternAffinity Capture-Westernin vitroin vivo | FSW = 0.0100
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT1G08410 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingSynthetic LethalitySynthetic Rescue | FSW = 0.2618
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.0463
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT4G31420 | Predictedinteraction prediction | FSW = 0.0716
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454