Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G25520 - ( ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S rRNA binding / structural constituent of ribosome )
48 Proteins interacs with AT3G25520| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G56070
   | Predictedtwo hybrid | FSW = 0.0170
| Class C:vacuoleplasma membranenucleus | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
| AT3G28715
| Predictedtwo hybrid | FSW = 0.0151
| Class C:vacuoleplasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
| AT3G22630
| PredictedAffinity Capture-MS | FSW = 0.0081
| Class C:vacuoleplasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT5G63840
| Predictedtwo hybrid | FSW = 0.0154
| Class C:plastid | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT1G06380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3219
| Class C:plastid | RIBOSOMAL PROTEIN-RELATED |
| AT5G39740
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4453
| Class C:plasma membranenucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
| AT3G11964 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1798
| Class C:plasma membranenucleus | RNA BINDING |
| AT2G37600
| Predictedtwo hybridCo-expression | FSW = 0.0891
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT2G31660 | Predictedin vitro | FSW = 0.0187
| Class C:nucleuscytosol | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
| AT2G44680
| Predictedtwo hybridtwo hybridtwo hybridin vivoin vivoin vitroin vivotwo hybrid | FSW = 0.0097
| Class C:nucleuscytosol | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
| AT4G16830
| PredictedAffinity Capture-MS | FSW = 0.0432
| Class C:nucleuscytosol | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
| AT3G55620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2147
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT3G23620
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2441
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT4G26600
| PredictedAffinity Capture-MS | FSW = 0.1658
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.4139
| Class C:nucleus | GTP-BINDING PROTEIN-RELATED |
| AT1G72440
| PredictedAffinity Capture-MS | FSW = 0.1896
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G16810
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3064
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT3G07050
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2909
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
| AT3G05060
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0420
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT5G15550
| PredictedAffinity Capture-MS | FSW = 0.2653
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G38710
| Predictedtwo hybrid | FSW = 0.0636
| Unknown | PROLINE OXIDASE PUTATIVE / OSMOTIC STRESS-RESPONSIVE PROLINE DEHYDROGENASE PUTATIVE |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT3G24080
| Predictedtwo hybrid | FSW = 0.0309
| Unknown | KRR1 FAMILY PROTEIN |
| AT3G05760
| Predictedtwo hybrid | FSW = 0.0142
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT4G28480
| Predictedtwo hybrid | FSW = 0.0421
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
| AT5G06160
| Predictedtwo hybrid | FSW = 0.0247
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G54750
| Predictedtwo hybrid | FSW = 0.0268
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
| AT1G13950
| Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0119
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
| AT2G16950
| Predictedin vitro | FSW = 0.0124
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
| AT3G02760
| Predictedin vitroin vivoAffinity Capture-MS | FSW = 0.0495
| Unknown | ATP BINDING / AMINOACYL-TRNA LIGASE/ HISTIDINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT1G03530
| PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G52980
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1944
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT1G08410
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1000
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT5G14520
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2681
| Unknown | PESCADILLO-RELATED |
| AT4G15770
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2545
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT4G01560
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2763
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT3G16840
| PredictedAffinity Capture-MS | FSW = 0.1223
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT2G36930
| PredictedAffinity Capture-MS | FSW = 0.1198
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
| AT2G34357 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0735
| Unknown | BINDING |
| AT2G21440
| PredictedAffinity Capture-MS | FSW = 0.2388
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G18220
| PredictedAffinity Capture-MS | FSW = 0.2653
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT2G03820
| PredictedAffinity Capture-MS | FSW = 0.0881
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.0879
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G52930
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3318
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G13160
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1759
| Unknown | SDA1 FAMILY PROTEIN |
| AT1G10170
| PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT1G04480 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1054
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
| AT4G33670
| Predictedtwo hybrid | FSW = 0.0207
| Unknown | L-GALACTOSE DEHYDROGENASE (L-GALDH) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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