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AT3G22630 - ( PBD1 (20S PROTEASOME BETA SUBUNIT D1) peptidase/ threonine-type endopeptidase )

82 Proteins interacs with AT3G22630

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G25490	Experimental biochemical	FSW = 0.2113	Class D: plastid (p = 0.78) cytosol (p = 0.67)	EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G07920	Predicted Affinity Capture-MS	FSW = 0.0099	Class C: vacuole plasma membrane	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G25520	Predicted Affinity Capture-MS	FSW = 0.0081	Class C: vacuole plasma membrane	ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G33120	Predicted Affinity Capture-MS	FSW = 0.0220	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L9 (RPL90B)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.0238	Class C: vacuole plasma membrane	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.0137	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT1G53850	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.2824	Class C: vacuole plasma membrane	PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G21720	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Gene fusion method Co-expression	FSW = 0.2399	Class C: vacuole	PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G51260	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3838	Class C: vacuole	PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G27020	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.2794	Class C: vacuole	PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G31300	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS synthetic growth defect Co-expression	FSW = 0.3530	Class C: vacuole	PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800	Predicted Phylogenetic profile method Co-expression	FSW = 0.4634	Class C: vacuole	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G22110	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1250	Class C: vacuole	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G37930	Predicted Affinity Capture-MS	FSW = 0.0072	Class C: plasma membrane	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) GLYCINE HYDROXYMETHYLTRANSFERASE/ POLY(U) BINDING
AT5G40450	Predicted two hybrid	FSW = 0.0114	Class C: plasma membrane	UNKNOWN PROTEIN
AT3G60820	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2323	Class C: plasma membrane	PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G18080	Predicted Affinity Capture-MS	FSW = 0.0113	Class C: plasma membrane	ATARCA NUCLEOTIDE BINDING
AT1G16030	Predicted Affinity Capture-MS	FSW = 0.0066	Class C: plasma membrane	HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT3G09840	Predicted Affinity Capture-MS	FSW = 0.0153	Class C: plasma membrane	CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT1G35160	Predicted Affinity Capture-MS	FSW = 0.0084	Class C: plasma membrane	GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G48750	Predicted Affinity Capture-Western Co-purification	FSW = 0.0258	Class C: plasma membrane	CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G02780	Predicted Reconstituted Complex	FSW = 0.0070	Class C: plasma membrane	EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G45000	Predicted Affinity Capture-MS Co-expression	FSW = 0.3507	Class C: plasma membrane	26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.0115	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT1G36160	Predicted Affinity Capture-MS	FSW = 0.0703	Class C: plasma membrane	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE
AT5G52640	Predicted Affinity Capture-MS	FSW = 0.0097	Class C: plasma membrane	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G04810	Predicted Affinity Capture-MS	FSW = 0.4347	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G20580	Predicted Affinity Capture-MS Co-expression	FSW = 0.2409	Class C: plasma membrane	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G47250	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3084	Class C: plasma membrane	PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G53750	Predicted Co-purification Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.3028	Class C: plasma membrane	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990	Predicted Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.2145	Class C: plasma membrane	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT1G10430	Predicted Affinity Capture-MS	FSW = 0.1361	Class C: plasma membrane	PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G20140	Predicted Affinity Capture-MS	FSW = 0.3071	Class C: plasma membrane	26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT4G24820	Predicted Affinity Capture-MS Co-expression	FSW = 0.3046	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT1G09100	Predicted Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.3073	Class C: plasma membrane	RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT1G20200	Predicted Affinity Capture-MS Co-purification Co-expression	FSW = 0.3767	Class C: plasma membrane	EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT1G64230	Predicted Co-purification	FSW = 0.0447	Class C: plasma membrane	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G29900	Predicted Affinity Capture-MS	FSW = 0.0069	Unknown	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT1G32220	Predicted Affinity Capture-MS	FSW = 0.0471	Unknown	BINDING / CATALYTIC/ COENZYME BINDING
AT2G31810	Predicted Affinity Capture-MS	FSW = 0.0494	Unknown	ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE
AT1G09180	Predicted interologs mapping	FSW = 0.0199	Unknown	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP BINDING
AT1G71440	Predicted Affinity Capture-MS	FSW = 0.0344	Unknown	PFI (PFIFFERLING)
AT4G16830	Predicted interologs mapping	FSW = 0.0094	Unknown	NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT1G20140	Predicted Affinity Capture-Western	FSW = 0.0064	Unknown	ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G06210	Predicted Affinity Capture-MS	FSW = 0.0652	Unknown	ELF8 (EARLY FLOWERING 8) BINDING
AT1G48920	Predicted interologs mapping	FSW = 0.0210	Unknown	ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G77440	Predicted Gene fusion method Co-expression	FSW = 0.1172	Unknown	PBC2 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G16470	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3260	Unknown	PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G16190	Predicted Affinity Capture-Western	FSW = 0.2124	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT4G27070	Predicted Affinity Capture-MS	FSW = 0.0032	Unknown	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT1G13060	Predicted two hybrid Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Phenotypic Enhancement Synthetic Rescue	FSW = 0.3128	Unknown	PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G58290	Predicted Affinity Capture-MS	FSW = 0.2481	Unknown	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT2G05840	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2203	Unknown	PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G36200	Predicted Affinity Capture-MS	FSW = 0.0559	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT1G79210	Predicted in vivo in vitro	FSW = 0.1663	Unknown	20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT1G56450	Predicted Phenotypic Enhancement Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement synthetic growth defect two hybrid Co-expression	FSW = 0.3364	Unknown	PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G09900	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3162	Unknown	EMB2107 (EMBRYO DEFECTIVE 2107)
AT1G29150	Predicted Affinity Capture-MS Co-expression	FSW = 0.2173	Unknown	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT3G11270	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.3082	Unknown	MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT4G19006	Predicted Affinity Capture-MS	FSW = 0.3101	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G23540	Predicted Affinity Capture-MS Co-expression	FSW = 0.2723	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT1G64520	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.3139	Unknown	RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT4G38630	Predicted Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification Co-expression	FSW = 0.2304	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT2G03430	Predicted Affinity Capture-MS	FSW = 0.2589	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT1G51710	Predicted Affinity Capture-MS	FSW = 0.2071	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G79730	Predicted Affinity Capture-MS	FSW = 0.0705	Unknown	ELF7 (EARLY FLOWERING 7)
AT5G61150	Predicted Affinity Capture-MS	FSW = 0.0302	Unknown	VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT3G48960	Predicted Affinity Capture-MS	FSW = 0.0054	Unknown	60S RIBOSOMAL PROTEIN L13 (RPL13C)
AT1G61040	Predicted Affinity Capture-MS	FSW = 0.0458	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT3G02040	Predicted Affinity Capture-MS	FSW = 0.0188	Unknown	SRG3 (SENESCENCE-RELATED GENE 3) GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE/ PHOSPHORIC DIESTER HYDROLASE
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0426	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT1G77600	Predicted Affinity Capture-MS	FSW = 0.0209	Unknown	BINDING
AT4G34910	Predicted Affinity Capture-MS	FSW = 0.0063	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT1G17370	Predicted Affinity Capture-MS	FSW = 0.0263	Unknown	UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING
AT4G25120	Predicted Affinity Capture-MS	FSW = 0.0086	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT3G27430	Predicted Affinity Capture-MS	FSW = 0.2873	Unknown	PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G50870	Predicted Affinity Capture-Western	FSW = 0.0517	Unknown	UBC27 (UBIQUITIN-CONJUGATING ENZYME 27) UBIQUITIN-PROTEIN LIGASE
AT1G14400	Predicted Affinity Capture-Western	FSW = 0.0667	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G64750	Predicted Affinity Capture-Western Co-expression	FSW = 0.3140	Unknown	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT1G26830	Predicted Affinity Capture-Western	FSW = 0.0117	Unknown	ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G25610	Predicted interologs mapping	FSW = 0.0320	Unknown	H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN
AT1G50370	Predicted Synthetic Lethality	FSW = 0.0241	Unknown	SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT3G22630 - ( PBD1 (20S PROTEASOME BETA SUBUNIT D1) peptidase/ threonine-type endopeptidase )

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