Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G22630 - ( PBD1 (20S PROTEASOME BETA SUBUNIT D1) peptidase/ threonine-type endopeptidase )

82 Proteins interacs with AT3G22630
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G25490

Experimental

biochemical

FSW = 0.2113

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G07920Predicted

Affinity Capture-MS

FSW = 0.0099

Class C:

vacuole

plasma membrane

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G25520

Predicted

Affinity Capture-MS

FSW = 0.0081

Class C:

vacuole

plasma membrane

ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G33120Predicted

Affinity Capture-MS

FSW = 0.0220

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L9 (RPL90B)
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.0238

Class C:

vacuole

plasma membrane

EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.0137

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT1G53850

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2824

Class C:

vacuole

plasma membrane

PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G21720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Gene fusion method

Co-expression

FSW = 0.2399

Class C:

vacuole

PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G51260

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3838

Class C:

vacuole

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G27020

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2794

Class C:

vacuole

PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G31300

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

Co-expression

FSW = 0.3530

Class C:

vacuole

PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4634

Class C:

vacuole

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G22110

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1250

Class C:

vacuole

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G37930

Predicted

Affinity Capture-MS

FSW = 0.0072

Class C:

plasma membrane

SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) GLYCINE HYDROXYMETHYLTRANSFERASE/ POLY(U) BINDING
AT5G40450

Predicted

two hybrid

FSW = 0.0114

Class C:

plasma membrane

UNKNOWN PROTEIN
AT3G60820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2323

Class C:

plasma membrane

PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G18080

Predicted

Affinity Capture-MS

FSW = 0.0113

Class C:

plasma membrane

ATARCA NUCLEOTIDE BINDING
AT1G16030

Predicted

Affinity Capture-MS

FSW = 0.0066

Class C:

plasma membrane

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT3G09840

Predicted

Affinity Capture-MS

FSW = 0.0153

Class C:

plasma membrane

CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT1G35160

Predicted

Affinity Capture-MS

FSW = 0.0084

Class C:

plasma membrane

GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G48750

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.0258

Class C:

plasma membrane

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G02780

Predicted

Reconstituted Complex

FSW = 0.0070

Class C:

plasma membrane

EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G45000

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3507

Class C:

plasma membrane

26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT2G37190

Predicted

Affinity Capture-MS

FSW = 0.0115

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT1G36160

Predicted

Affinity Capture-MS

FSW = 0.0703

Class C:

plasma membrane

ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0097

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G04810

Predicted

Affinity Capture-MS

FSW = 0.4347

Class C:

plasma membrane

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G20580

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2409

Class C:

plasma membrane

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G47250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3084

Class C:

plasma membrane

PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G53750

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.3028

Class C:

plasma membrane

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990

Predicted

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.2145

Class C:

plasma membrane

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT1G10430

Predicted

Affinity Capture-MS

FSW = 0.1361

Class C:

plasma membrane

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G20140

Predicted

Affinity Capture-MS

FSW = 0.3071

Class C:

plasma membrane

26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT4G24820

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3046

Class C:

plasma membrane

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT1G09100

Predicted

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.3073

Class C:

plasma membrane

RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT1G20200

Predicted

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.3767

Class C:

plasma membrane

EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT1G64230

Predicted

Co-purification

FSW = 0.0447

Class C:

plasma membrane

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G29900

Predicted

Affinity Capture-MS

FSW = 0.0069

Unknown

CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT1G32220

Predicted

Affinity Capture-MS

FSW = 0.0471

Unknown

BINDING / CATALYTIC/ COENZYME BINDING
AT2G31810

Predicted

Affinity Capture-MS

FSW = 0.0494

Unknown

ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE
AT1G09180

Predicted

interologs mapping

FSW = 0.0199

Unknown

ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP BINDING
AT1G71440

Predicted

Affinity Capture-MS

FSW = 0.0344

Unknown

PFI (PFIFFERLING)
AT4G16830

Predicted

interologs mapping

FSW = 0.0094

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT1G20140

Predicted

Affinity Capture-Western

FSW = 0.0064

Unknown

ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G06210

Predicted

Affinity Capture-MS

FSW = 0.0652

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT1G48920

Predicted

interologs mapping

FSW = 0.0210

Unknown

ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G77440

Predicted

Gene fusion method

Co-expression

FSW = 0.1172

Unknown

PBC2 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G16470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3260

Unknown

PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G16190

Predicted

Affinity Capture-Western

FSW = 0.2124

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT4G27070

Predicted

Affinity Capture-MS

FSW = 0.0032

Unknown

TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT1G13060

Predicted

two hybrid

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Phenotypic Enhancement

Synthetic Rescue

FSW = 0.3128

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G58290

Predicted

Affinity Capture-MS

FSW = 0.2481

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT2G05840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2203

Unknown

PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G36200

Predicted

Affinity Capture-MS

FSW = 0.0559

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT1G79210

Predicted

in vivo

in vitro

FSW = 0.1663

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT1G56450

Predicted

Phenotypic Enhancement

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

synthetic growth defect

two hybrid

Co-expression

FSW = 0.3364

Unknown

PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G09900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3162

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT1G29150

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2173

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT3G11270

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3082

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT4G19006

Predicted

Affinity Capture-MS

FSW = 0.3101

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G23540

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2723

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT1G64520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.3139

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT4G38630

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Co-expression

FSW = 0.2304

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT2G03430

Predicted

Affinity Capture-MS

FSW = 0.2589

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT1G51710

Predicted

Affinity Capture-MS

FSW = 0.2071

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G79730

Predicted

Affinity Capture-MS

FSW = 0.0705

Unknown

ELF7 (EARLY FLOWERING 7)
AT5G61150

Predicted

Affinity Capture-MS

FSW = 0.0302

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT3G48960

Predicted

Affinity Capture-MS

FSW = 0.0054

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13C)
AT1G61040

Predicted

Affinity Capture-MS

FSW = 0.0458

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT3G02040

Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

SRG3 (SENESCENCE-RELATED GENE 3) GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE/ PHOSPHORIC DIESTER HYDROLASE
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.0426

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT1G77600

Predicted

Affinity Capture-MS

FSW = 0.0209

Unknown

BINDING
AT4G34910

Predicted

Affinity Capture-MS

FSW = 0.0063

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT1G17370

Predicted

Affinity Capture-MS

FSW = 0.0263

Unknown

UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING
AT4G25120Predicted

Affinity Capture-MS

FSW = 0.0086

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT3G27430

Predicted

Affinity Capture-MS

FSW = 0.2873

Unknown

PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G50870

Predicted

Affinity Capture-Western

FSW = 0.0517

Unknown

UBC27 (UBIQUITIN-CONJUGATING ENZYME 27) UBIQUITIN-PROTEIN LIGASE
AT1G14400

Predicted

Affinity Capture-Western

FSW = 0.0667

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G64750

Predicted

Affinity Capture-Western

Co-expression

FSW = 0.3140

Unknown

ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT1G26830

Predicted

Affinity Capture-Western

FSW = 0.0117

Unknown

ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G25610

Predicted

interologs mapping

FSW = 0.0320

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN
AT1G50370

Predicted

Synthetic Lethality

FSW = 0.0241

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE

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Fasta sequences:

Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454