Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61150 - ( VIP4 (VERNALIZATION INDEPENDENCE 4) protein binding )
84 Proteins interacs with AT5G61150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.0302
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G64790 | PredictedPhenotypic Suppression | FSW = 0.0769
| Unknown | BINDING |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0495
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT3G07100 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G23340 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | CKL10 (CASEIN KINASE I-LIKE 10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59690 | PredictedPhenotypic Enhancement | FSW = 0.2033
| Unknown | HISTONE H4 |
AT5G22330 | PredictedPhenotypic Enhancement | FSW = 0.0781
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.1002
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT1G73820 | PredictedPhenotypic Enhancement | FSW = 0.0780
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT5G63110 | PredictedPhenotypic Enhancement | FSW = 0.1614
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.2224
| Unknown | SEC22 TRANSPORTER |
AT5G12480 | Predictedbiochemical | FSW = 0.0109
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G53750 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0345
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT1G08130 | PredictedPhenotypic Enhancement | FSW = 0.0810
| Unknown | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP) |
AT3G12810 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2652
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G44530 | PredictedPhenotypic Enhancement | FSW = 0.2249
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G17590 | PredictedPhenotypic Enhancement | FSW = 0.0619
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT4G10710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2062
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G10670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1014
| Unknown | GTC2 |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.1085
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G72050 | PredictedPhenotypic Enhancement | FSW = 0.0194
| Unknown | TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G07370 | PredictedPhenotypic Suppression | FSW = 0.1037
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G63490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0479
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT2G13370 | PredictedPhenotypic Suppression | FSW = 0.1716
| Unknown | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G27470 | PredictedPhenotypic Enhancement | FSW = 0.1500
| Unknown | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
AT2G36740 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3013
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.2776
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT4G08350 | PredictedAffinity Capture-MSSynthetic Rescueinteraction prediction | FSW = 0.1040
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MSSynthetic Rescue | FSW = 0.0733
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G55750 | PredictedPhenotypic Enhancement | FSW = 0.0437
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT2G06210 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2741
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0507
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT5G66130 | PredictedPhenotypic Enhancement | FSW = 0.0594
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT3G28730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1675
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0117
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G08780 | PredictedPhenotypic Suppression | FSW = 0.1167
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29150 | PredictedPhenotypic Suppression | FSW = 0.0639
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G29990 | PredictedPhenotypic Suppression | FSW = 0.0866
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G51310 | PredictedPhenotypic Enhancement | FSW = 0.1263
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT1G52740 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.2768
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.2658
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G61040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementinteraction prediction | FSW = 0.3849
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.1367
| Unknown | SGA2 |
AT1G79730 | Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationSynthetic Rescueinteraction predictionCo-expression | FSW = 0.3156
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G27970 | PredictedPhenotypic Enhancement | FSW = 0.0278
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G34500 | PredictedPhenotypic Enhancement | FSW = 0.0495
| Unknown | CYP710A1 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 1) C-22 STEROL DESATURASE/ OXYGEN BINDING |
AT3G18520 | PredictedPhenotypic Suppression | FSW = 0.1956
| Unknown | HDA15 HISTONE DEACETYLASE |
AT3G21060 | Predictedsynthetic growth defect | FSW = 0.2643
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22480 | PredictedPhenotypic Suppression | FSW = 0.1243
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G22590 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementinteraction prediction | FSW = 0.2894
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT4G04210 | PredictedPhenotypic Suppression | FSW = 0.1034
| Unknown | PUX4 PROTEIN BINDING |
AT4G22140 | PredictedPhenotypic Enhancement | FSW = 0.1011
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G33100 | PredictedPhenotypic Enhancement | FSW = 0.1404
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.1847
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10270 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1462
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G10390 | PredictedPhenotypic Enhancement | FSW = 0.2202
| Unknown | HISTONE H3 |
AT5G10400 | PredictedPhenotypic Enhancement | FSW = 0.2256
| Unknown | HISTONE H3 |
AT5G14530 | PredictedPhenotypic Enhancement | FSW = 0.0510
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G23290 | PredictedPhenotypic Suppression | FSW = 0.1160
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G41880 | PredictedPhenotypic Suppression | FSW = 0.1219
| Unknown | POLA3 DNA PRIMASE |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.1849
| Unknown | ORMDL FAMILY PROTEIN |
AT5G45600 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2294
| Unknown | GAS41 PROTEIN BINDING |
AT5G46030 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2684
| Unknown | UNKNOWN PROTEIN |
AT5G58003 | Predictedsynthetic growth defect | FSW = 0.0936
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT1G32130 | PredictedPhenotypic Enhancement | FSW = 0.2548
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G54390 | PredictedSynthetic Lethality | FSW = 0.1028
| Unknown | PHD FINGER PROTEIN-RELATED |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0041
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G23070 | PredictedAffinity Capture-MS | FSW = 0.1290
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G37840 | Predictedbiochemical | FSW = 0.0266
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G43790 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0324
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT2G44150 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2661
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G01090 | Predictedbiochemical | FSW = 0.0859
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G25100 | PredictedSynthetic LethalityCo-expression | FSW = 0.0852
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.1361
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G24840 | PredictedSynthetic Lethality | FSW = 0.0035
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G66640 | Predictedbiochemical | FSW = 0.0020
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G63670 | PredictedPhenotypic Enhancement | FSW = 0.2470
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G20320 | Predictedsynthetic growth defect | FSW = 0.1277
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT3G49660 | Predictedsynthetic growth defect | FSW = 0.1560
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G18000 | PredictedSynthetic Lethality | FSW = 0.1780
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT1G54370 | Predictedtwo hybridinteraction prediction | FSW = 0.0178
| Unknown | NHX5 SODIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT4G21660 | Predictedtwo hybridinteraction prediction | FSW = 0.0033
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT3G20630 | Predictedinteraction predictiontwo hybrid | FSW = 0.0071
| Unknown | UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454