Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G44530 - ( HIRA (Arabidopsis homolog of histone chaperone HIRA) nucleotide binding / protein binding )

69 Proteins interacs with AT3G44530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G65620

Experimental

coimmunoprecipitation

FSW = 0.0444

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 AS2 (ASYMMETRIC LEAVES 2) PROTEIN BINDING
AT5G59690Predicted

Affinity Capture-Western

FSW = 0.1766

Class C:

nucleus

 HISTONE H4
AT3G10220

Predicted

synthetic growth defect

FSW = 0.0139

Class C:

nucleus

 TUBULIN FOLDING COFACTOR B
AT2G30260

Predicted

Phenotypic Enhancement

FSW = 0.0133

Class C:

nucleus

 U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G17790

Predicted

Synthetic Lethality

FSW = 0.1351

Class C:

nucleus

 DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN
AT5G35910

Predicted

Phenotypic Enhancement

FSW = 0.1316

Class C:

nucleus

 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT2G33610

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0653

Class C:

nucleus

 ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING
AT2G43810

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1307

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT3G17590

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.1575

Class C:

nucleus

 BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT5G64630

Predicted

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1527

Class C:

nucleus

 FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G19120

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2013

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

Synthetic Lethality

FSW = 0.0747

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G21700

Predicted

Affinity Capture-Western

FSW = 0.0635

Class C:

nucleus

 ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT5G19310

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0575

Class C:

nucleus

 HOMEOTIC GENE REGULATOR PUTATIVE
AT4G10710

Predicted

Synthetic Lethality

FSW = 0.1217

Class C:

nucleus

 SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670

Predicted

Synthetic Lethality

FSW = 0.1353

Class C:

nucleus

 GTC2
AT5G02570

Predicted

Reconstituted Complex

two hybrid

FSW = 0.0146

Class C:

nucleus

 HISTONE H2B PUTATIVE
AT1G65470

Predicted

Synthetic Lethality

synthetic growth defect

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1609

Class C:

nucleus

 FAS1 (FASCIATA 1) HISTONE BINDING
AT1G07370

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1623

Class C:

nucleus

 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G06230

Predicted

Synthetic Lethality

Co-expression

FSW = 0.1351

Class C:

nucleus

 GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING
AT3G06010

Predicted

Affinity Capture-Western

FSW = 0.0519

Class C:

nucleus

 ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G07660Predicted

Affinity Capture-Western

FSW = 0.0796

Unknown

 HISTONE H4
AT1G64790Predicted

Phenotypic Enhancement

FSW = 0.0906

Unknown

 BINDING
AT4G38495

Predicted

Synthetic Lethality

FSW = 0.0432

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK)
AT3G02520

Predicted

Phenotypic Enhancement

FSW = 0.1059

Unknown

 GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G49940

Predicted

in vitro

two hybrid

FSW = 0.0139

Unknown

 NFU2 (NIFU-LIKE PROTEIN 2) STRUCTURAL MOLECULE
AT3G10050

Predicted

Phenotypic Enhancement

FSW = 0.0120

Unknown

 OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0128

Unknown

 ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G47010

Predicted

two hybrid

FSW = 0.0180

Unknown

 LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT3G20970

Predicted

in vitro

two hybrid

FSW = 0.0032

Unknown

 NFU4 STRUCTURAL MOLECULE
AT3G28730

Predicted

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.1416

Unknown

 ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT2G05170

Predicted

synthetic growth defect

FSW = 0.0391

Unknown

 ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT1G67190

Predicted

synthetic growth defect

FSW = 0.1102

Unknown

 F-BOX FAMILY PROTEIN
AT3G22590

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1898

Unknown

 RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT1G04730Predicted

Phenotypic Enhancement

FSW = 0.2470

Unknown

 AAA-TYPE ATPASE FAMILY PROTEIN
AT1G07705

Predicted

Phenotypic Enhancement

FSW = 0.0670

Unknown

 TRANSCRIPTION REGULATOR
AT1G08780

Predicted

Phenotypic Enhancement

FSW = 0.0799

Unknown

 AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G10930

Predicted

Phenotypic Enhancement

FSW = 0.1278

Unknown

 RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G32130

Predicted

Phenotypic Enhancement

FSW = 0.1832

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G66740

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

interaction prediction

FSW = 0.2608

Unknown

 SGA2
AT1G79730

Predicted

Phenotypic Enhancement

FSW = 0.1601

Unknown

 ELF7 (EARLY FLOWERING 7)
AT3G10530

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0035

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.1477

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G25100

Predicted

Synthetic Lethality

FSW = 0.0296

Unknown

 CDC45 (CELL DIVISION CYCLE 45)
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.1082

Unknown

 SAC3/GANP FAMILY PROTEIN
AT4G16970

Predicted

Synthetic Lethality

FSW = 0.0411

Unknown

 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G09740

Predicted

synthetic growth defect

FSW = 0.2526

Unknown

 HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.1139

Unknown

 ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10390Predicted

Phenotypic Enhancement

FSW = 0.2874

Unknown

 HISTONE H3
AT5G43500

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1865

Unknown

 ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G46030

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2291

Unknown

 UNKNOWN PROTEIN
AT5G48640

Predicted

Phenotypic Enhancement

FSW = 0.0866

Unknown

 CYCLIN FAMILY PROTEIN
AT5G49510

Predicted

Phenotypic Enhancement

FSW = 0.0550

Unknown

 PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G53770

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1134

Unknown

 NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G61150

Predicted

Phenotypic Enhancement

FSW = 0.2249

Unknown

 VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G63610

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1070

Unknown

 CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G63670

Predicted

Affinity Capture-Western

Phenotypic Enhancement

Synthetic Lethality

interologs mapping

interaction prediction

FSW = 0.2043

Unknown

 SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT3G58560

Predicted

synthetic growth defect

FSW = 0.1624

Unknown

 ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G10270

Predicted

synthetic growth defect

FSW = 0.1998

Unknown

 CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10400Predicted

Affinity Capture-Western

FSW = 0.2167

Unknown

 HISTONE H3
AT5G10960

Predicted

synthetic growth defect

FSW = 0.1481

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G26680

Predicted

synthetic growth defect

FSW = 0.1566

Unknown

 ENDONUCLEASE PUTATIVE
AT5G45600

Predicted

synthetic growth defect

FSW = 0.2367

Unknown

 GAS41 PROTEIN BINDING
AT1G09200Predicted

Affinity Capture-Western

FSW = 0.1373

Unknown

 HISTONE H3
AT5G08565

Predicted

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1454

Unknown

 POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G40490

Predicted

synthetic growth defect

FSW = 0.0547

Unknown

 RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G15920

Predicted

synthetic growth defect

FSW = 0.1242

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT2G18000

Predicted

synthetic growth defect

FSW = 0.1431

Unknown

 TAF14 (TBP-ASSOCIATED FACTOR 14)
AT3G50240

Predicted

Gene fusion method

FSW = 0.0444

Unknown

 KICP-02 ATP BINDING / MICROTUBULE MOTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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