Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G40490 - ( RNA recognition motif (RRM)-containing protein )
51 Proteins interacs with AT5G40490| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G39410
   | Predictedtwo hybridtwo hybrid | FSW = 0.0269
| Unknown | BINDING / CATALYTIC |
| AT5G10350
| PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
| AT3G03920
| Predictedtwo hybridCo-expression | FSW = 0.0278
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT1G79280
| PredictedAffinity Capture-Western | FSW = 0.0312
| Unknown | NUA (NUCLEAR PORE ANCHOR) |
| AT3G11630
| Predictedsynthetic growth defect | FSW = 0.0696
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT4G35800
| PredictedAffinity Capture-Western | FSW = 0.0164
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G73180
| PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED |
| AT2G42520
| PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT2G19670
| PredictedSynthetic LethalitySynthetic Lethalitybiochemicalbiochemicalbiochemicalbiochemicalinterologs mappingSynthetic Lethalitytwo hybridCo-expression | FSW = 0.1241
| Unknown | PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) PROTEIN-ARGININE N-METHYLTRANSFERASE |
| AT5G41580
| Predictedtwo hybrid | FSW = 0.0381
| Unknown | ZINC ION BINDING |
| AT3G50670
| PredictedAffinity Capture-Western | FSW = 0.0244
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G44530
| Predictedsynthetic growth defect | FSW = 0.0547
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G44200
| PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityCo-expression | FSW = 0.0984
| Unknown | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
| AT1G48920
| Predictedtwo hybridCo-expression | FSW = 0.0671
| Unknown | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G05060
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0313
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT5G22750
| Predictedsynthetic growth defect | FSW = 0.2013
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT5G11170
| Predictedtwo hybrid | FSW = 0.0394
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT3G20010
| Predictedin vivoCo-expression | FSW = 0.0317
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT3G47690
| PredictedSynthetic Lethality | FSW = 0.1212
| Unknown | ATEB1A MICROTUBULE BINDING |
| AT2G31970
| Predictedsynthetic growth defectCo-expression | FSW = 0.1255
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
| AT5G57450
| Predictedsynthetic growth defect | FSW = 0.1209
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
| AT5G54260
| Predictedsynthetic growth defect | FSW = 0.1289
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G36200
| PredictedSynthetic Lethality | FSW = 0.0569
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT5G20850
| Predictedsynthetic growth defect | FSW = 0.0942
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
| AT1G01510
| Predictedtwo hybrid | FSW = 0.0099
| Unknown | AN (ANGUSTIFOLIA) PROTEIN BINDING |
| AT5G26680
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-WesternReconstituted Complexin vitroin vivoSynthetic LethalityCo-expression | FSW = 0.1299
| Unknown | ENDONUCLEASE PUTATIVE |
| AT2G16950
| Predictedin vitro | FSW = 0.0179
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
| AT5G50310
| PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
| AT1G75660
| PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
| AT1G22760
| PredictedAffinity Capture-MS | FSW = 0.0884
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT5G10270
| PredictedAffinity Capture-MS | FSW = 0.1637
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
| AT1G17370
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0605
| Unknown | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING |
| AT1G11650
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0540
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
| AT5G62600
| PredictedSynthetic LethalityReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingSynthetic Lethality | FSW = 0.0548
| Unknown | TRANSPORTIN-SR-RELATED |
| AT3G13224
| PredictedAffinity Capture-WesternSynthetic Rescue | FSW = 0.0476
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G02690
| PredictedAffinity Capture-WesternCo-expression | FSW = 0.0341
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
| AT2G29400
| PredictedAffinity Capture-Western | FSW = 0.0042
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G54440
| PredictedAffinity Capture-WesternSynthetic Lethalitytwo hybrid | FSW = 0.0831
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
| AT2G17530
| Predictedbiochemicalbiochemicalbiochemicalbiochemical | FSW = 0.0344
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G13780
| Predictedsynthetic growth defect | FSW = 0.0954
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
| AT4G25120 | Predictedsynthetic growth defect | FSW = 0.1512
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
| AT1G80410
| Predictedsynthetic growth defect | FSW = 0.0763
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT1G66740
| Predictedsynthetic growth defectCo-expression | FSW = 0.0959
| Unknown | SGA2 |
| AT1G15920
| Predictedsynthetic growth defect | FSW = 0.1566
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
| AT1G10930
| Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1214
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G53770
| PredictedSynthetic Lethality | FSW = 0.0542
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
| AT1G55255 | PredictedSynthetic Lethality | FSW = 0.1168
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
| AT1G14400
| PredictedSynthetic Lethality | FSW = 0.1287
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
| AT1G54140
| PredictedSynthetic Lethality | FSW = 0.0266
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
| AT1G55150
| Predictedtwo hybridCo-expression | FSW = 0.0126
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
| AT2G44065
| Predictedtwo hybrid | FSW = 0.0889
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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