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AT3G50670 - ( U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA binding / nucleic acid binding / nucleotide binding )

128 Proteins interacs with AT3G50670

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G55310	Experimental pull down two hybrid Reconstituted Complex coimmunoprecipitation	FSW = 0.0600	Class A: nucleus Class B: plasma membrane Class D: plastid (p = 0.78) nucleus (p = 0.78) mitochondrion (p = 0.82)	SR33 RNA BINDING / PROTEIN BINDING
AT1G16610	Experimental pull down pull down two hybrid Reconstituted Complex coimmunoprecipitation	FSW = 0.0992	Class A: nucleus Class D: plastid (p = 0.78) nucleus (p = 0.78) mitochondrion (p = 0.82)	SR45 RNA BINDING / PROTEIN BINDING
AT2G41070	Experimental	FSW = 0.0122	Class A: nucleus Class D: plastid (p = 0.78) nucleus (p = 0.78)	EEL (ENHANCED EM LEVEL) DNA BINDING / TRANSCRIPTION FACTOR
AT4G31580	Experimental far western blotting two hybrid Reconstituted Complex	FSW = 0.0079	Class A: nucleus Class D: nucleus (p = 0.78) mitochondrion (p = 0.82)	SRZ-22 PROTEIN BINDING
AT1G23860	Experimental far western blotting two hybrid Reconstituted Complex	FSW = 0.0285	Class A: nucleus Class D: nucleus (p = 0.78) mitochondrion (p = 0.82)	RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) PROTEIN BINDING
AT1G02840	Experimental confocal microscopy	FSW = 0.0972	Class A: nucleus Class D: nucleus (p = 0.78) mitochondrion (p = 0.82)	SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G32420	Experimental two hybrid	FSW = 0.0267	Class A: nucleus Class D: nucleus (p = 0.78)	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT3G63400	Experimental two hybrid Reconstituted Complex	FSW = 0.0283	Class A: nucleus Class D: nucleus (p = 0.78)	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT5G06960	Experimental	FSW = 0.0094	Class A: nucleus Class D: nucleus (p = 0.78)	OBF5 (OCS-ELEMENT BINDING FACTOR 5) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G05000	Experimental gtpase assay	FSW = 0.0081	Class B: unclear plastid nucleus Class D: mitochondrion (p = 0.82)	TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34) GTP BINDING
AT5G35410	Experimental confocal microscopy interaction detection method	FSW = 0.0072	Unknown	SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE
AT1G72730	Predicted Phenotypic Suppression	FSW = 0.0152	Class C: nucleus	EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT4G02840	Predicted Affinity Capture-MS Co-purification	FSW = 0.1239	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G20960	Predicted two hybrid two hybrid Affinity Capture-Western interologs mapping interaction prediction	FSW = 0.1096	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G09760	Predicted Affinity Capture-MS Shared biological function Enriched domain pair Co-expression	FSW = 0.1400	Class C: nucleus	U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G55920	Predicted Affinity Capture-MS	FSW = 0.0221	Class C: nucleus	ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT2G17520	Predicted two hybrid	FSW = 0.0013	Class C: nucleus	IRE1A ENDORIBONUCLEASE/ KINASE
AT5G24360	Predicted interaction prediction	FSW = 0.0083	Class C: nucleus	IRE1-1 (INOSITOL REQUIRING 1-1) ATP BINDING / ENDORIBONUCLEASE PRODUCING 5-PHOSPHOMONOESTERS / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G29510	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0267	Class C: nucleus	PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT2G19670	Predicted two hybrid	FSW = 0.0267	Class C: nucleus	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT2G47640	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.1034	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT3G19840	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1257	Class C: nucleus	FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT4G30220	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.1603	Class C: nucleus	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT1G77950	Predicted Affinity Capture-MS	FSW = 0.0109	Class C: nucleus	AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR
AT2G23930	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1277	Class C: nucleus	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT1G76300	Predicted Co-purification	FSW = 0.0195	Class C: nucleus	SMD3 (SNRNP CORE PROTEIN SMD3)
AT2G47580	Predicted Co-purification	FSW = 0.0273	Class C: nucleus	U1A (SPLICEOSOMAL PROTEIN U1A) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G11500	Predicted Co-purification interaction prediction	FSW = 0.0886	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE
AT5G44500	Predicted Co-purification	FSW = 0.0139	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT1G20580	Predicted Affinity Capture-MS	FSW = 0.1527	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G44200	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0929	Class C: nucleus	CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT5G64200	Predicted in vitro Co-expression	FSW = 0.0395	Class C: nucleus	ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G61860	Predicted Shared biological function Co-expression	FSW = 0.0561	Class C: nucleus	RSP31 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G03120	Predicted in vivo in vitro	FSW = 0.0165	Class C: nucleus	PROLINE-RICH FAMILY PROTEIN
AT3G06720	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0251	Class C: nucleus	IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT1G04510	Predicted Co-purification	FSW = 0.0707	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G25340	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0147	Class C: nucleus	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT3G18600	Predicted Affinity Capture-MS	FSW = 0.0061	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT4G30330	Predicted Affinity Capture-MS	FSW = 0.1177	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT2G18740	Predicted Co-purification Affinity Capture-MS	FSW = 0.1047	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G30470	Predicted Affinity Capture-MS	FSW = 0.0324	Unknown	SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT2G01690	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0113	Unknown	BINDING
AT3G62870	Predicted Affinity Capture-MS	FSW = 0.0260	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G04940	Predicted Protein-RNA	FSW = 0.0443	Unknown	SCRAMBLASE-RELATED
AT3G19980	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0115	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G33650	Predicted Affinity Capture-MS	FSW = 0.0175	Unknown	DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT5G36880	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0033	Unknown	ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT2G39290	Predicted Affinity Capture-MS	FSW = 0.0081	Unknown	PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT3G05790	Predicted interaction prediction	FSW = 0.0437	Unknown	LON4 (LON PROTEASE 4) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE
AT1G80070	Predicted two hybrid Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1232	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT4G39960	Predicted two hybrid	FSW = 0.0173	Unknown	DNAJ HEAT SHOCK FAMILY PROTEIN
AT2G22360	Predicted interaction prediction	FSW = 0.0058	Unknown	DNAJ HEAT SHOCK FAMILY PROTEIN
AT1G80030	Predicted two hybrid	FSW = 0.0089	Unknown	DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT5G15450	Predicted Protein-RNA	FSW = 0.0255	Unknown	CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G33340	Predicted Co-purification	FSW = 0.0762	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G36160	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0464	Unknown	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE
AT5G47010	Predicted two hybrid interaction prediction	FSW = 0.0058	Unknown	LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT5G22000	Predicted in vitro two hybrid	FSW = 0.0273	Unknown	RHF2A (RING-H2 GROUP F2A) PROTEIN BINDING / ZINC ION BINDING
AT1G63110	Predicted Protein-RNA	FSW = 0.0452	Unknown	CELL DIVISION CYCLE PROTEIN-RELATED
AT4G21680	Predicted Affinity Capture-MS	FSW = 0.0111	Unknown	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G47630	Predicted Affinity Capture-MS	FSW = 0.0133	Unknown	MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT1G15870	Predicted Affinity Capture-MS	FSW = 0.0042	Unknown	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT3G05780	Predicted Affinity Capture-MS	FSW = 0.0301	Unknown	LON3 (LON PROTEASE 3) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE
AT5G02050	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0033	Unknown	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT5G26860	Predicted Affinity Capture-MS	FSW = 0.0100	Unknown	LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT5G51220	Predicted interaction prediction two hybrid	FSW = 0.0079	Unknown	UBIQUINOL-CYTOCHROME C CHAPERONE FAMILY PROTEIN
AT1G65310	Predicted two hybrid	FSW = 0.0341	Unknown	XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE
AT3G13900	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0018	Unknown	ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT4G30290	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0288	Unknown	XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE
AT5G55160	Predicted Affinity Capture-MS	FSW = 0.0667	Unknown	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) PROTEIN BINDING / PROTEIN TAG
AT4G17190	Predicted Protein-RNA	FSW = 0.0217	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT3G27530	Predicted two hybrid Co-expression	FSW = 0.0063	Unknown	GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER
AT5G44750	Predicted two hybrid two hybrid	FSW = 0.0136	Unknown	REV1 DNA-DIRECTED DNA POLYMERASE
AT5G12410	Predicted two hybrid Co-expression	FSW = 0.0141	Unknown	THUMP DOMAIN-CONTAINING PROTEIN
AT2G25970	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.0174	Unknown	KH DOMAIN-CONTAINING PROTEIN
AT2G34780	Predicted two hybrid	FSW = 0.0136	Unknown	MEE22 (MATERNAL EFFECT EMBRYO ARREST 22)
AT4G10070	Predicted Reconstituted Complex Affinity Capture-Western	FSW = 0.0056	Unknown	KH DOMAIN-CONTAINING PROTEIN
AT1G50300	Predicted two hybrid Affinity Capture-Western	FSW = 0.0153	Unknown	TAF15 (TBP-ASSOCIATED FACTOR 15) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G54380	Predicted two hybrid in vitro Co-expression	FSW = 0.0565	Unknown	SPLICEOSOME PROTEIN-RELATED
AT4G02430	Predicted in vitro	FSW = 0.0324	Unknown	PRE-MRNA SPLICING FACTOR PUTATIVE / SR1 PROTEIN PUTATIVE
AT5G26751	Predicted Affinity Capture-MS	FSW = 0.0112	Unknown	ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G25550	Predicted Reconstituted Complex	FSW = 0.0185	Unknown	PROTEIN BINDING
AT5G22840	Predicted in vivo in vitro	FSW = 0.0157	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT5G58003	Predicted in vivo	FSW = 0.0072	Unknown	CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT1G05830	Predicted Protein-RNA	FSW = 0.0558	Unknown	ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT1G07830	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0094	Unknown	RIBOSOMAL PROTEIN L29 FAMILY PROTEIN
AT1G15130	Predicted two hybrid interaction prediction	FSW = 0.0058	Unknown	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT1G21370	Predicted Protein-RNA	FSW = 0.0349	Unknown	UNKNOWN PROTEIN
AT1G31660	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0013	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G49760	Predicted Affinity Capture-MS	FSW = 0.0346	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G59890	Predicted two hybrid	FSW = 0.0056	Unknown	SNL5 (SIN3-LIKE 5)
AT1G74320	Predicted Affinity Capture-MS	FSW = 0.0480	Unknown	CHOLINE KINASE PUTATIVE
AT2G28360	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0398	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT2G37420	Predicted two hybrid	FSW = 0.0242	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT2G46230	Predicted Affinity Capture-MS	FSW = 0.1048	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK)
AT3G03340	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification interaction prediction	FSW = 0.2255	Unknown	UNE6 (UNFERTILIZED EMBRYO SAC 6)
AT3G47120	Predicted Affinity Capture-MS	FSW = 0.0181	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G27320	Predicted Affinity Capture-MS	FSW = 0.0110	Unknown	AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G51770	Predicted Affinity Capture-MS	FSW = 0.0132	Unknown	UNKNOWN PROTEIN
AT2G31020	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0159	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT3G18660	Predicted Affinity Capture-MS	FSW = 0.0106	Unknown	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G60240	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0129	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G20870	Predicted Affinity Capture-MS	FSW = 0.0368	Unknown	FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT5G46400	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1322	Unknown	PRP39-2
AT3G55220	Predicted Affinity Capture-MS	FSW = 0.1242	Unknown	SPLICING FACTOR PUTATIVE
AT4G00810	Predicted Protein-RNA	FSW = 0.0494	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B)
AT5G43850	Predicted two hybrid	FSW = 0.0172	Unknown	ARD4 ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING
AT5G49970	Predicted Protein-RNA	FSW = 0.0446	Unknown	ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G59490	Predicted Affinity Capture-MS	FSW = 0.0843	Unknown	HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT5G65900	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0028	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G04080	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0724	Unknown	PRP39 BINDING
AT3G19670	Predicted Co-purification interaction prediction	FSW = 0.0300	Unknown	PROTEIN BINDING
AT1G44910	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1166	Unknown	PROTEIN BINDING
AT1G07990	Predicted Affinity Capture-MS	FSW = 0.0130	Unknown	SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT1G02690	Predicted Affinity Capture-MS	FSW = 0.0317	Unknown	IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT3G12340	Predicted Affinity Capture-MS	FSW = 0.0064	Unknown	FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G50370	Predicted Affinity Capture-MS	FSW = 0.0212	Unknown	SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT1G11650	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western interaction prediction	FSW = 0.1261	Unknown	RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE
AT1G22760	Predicted Affinity Capture-MS Shared biological function Co-expression	FSW = 0.0467	Unknown	PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G40490	Predicted Affinity Capture-Western	FSW = 0.0244	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G15780	Predicted interologs mapping two hybrid interaction prediction	FSW = 0.0040	Unknown	UNKNOWN PROTEIN
AT2G28620	Predicted interologs mapping two hybrid interaction prediction	FSW = 0.0248	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT2G04930	Predicted in vivo	FSW = 0.0204	Unknown	NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT5G16260	Predicted in vivo Co-expression	FSW = 0.0192	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G26400	Predicted two hybrid	FSW = 0.0273	Unknown	ATARD3 (ACIREDUCTONE DIOXYGENASE 3) ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ HETEROGLYCAN BINDING / METAL ION BINDING
AT1G10450	Predicted two hybrid	FSW = 0.0068	Unknown	SNL6 (SIN3-LIKE 6)
AT1G24190	Predicted interaction prediction	FSW = 0.0105	Unknown	SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR
AT3G20860	Predicted interaction prediction	FSW = 0.0102	Unknown	ATNEK5 (NIMA-RELATED KINASE5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT3G50670 - ( U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA binding / nucleic acid binding / nucleotide binding )

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