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AT4G30220 - ( RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) )

57 Proteins interacs with AT4G30220

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G02090	Predicted Affinity Capture-MS	FSW = 0.0070	Class C: nucleus	MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT3G07590	Predicted Affinity Capture-MS Co-expression	FSW = 0.4103	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT4G02840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4805	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G20960	Predicted Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.5361	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G09760	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.5182	Class C: nucleus	U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G09770	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3610	Class C: nucleus	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT5G64270	Predicted Affinity Capture-MS interaction prediction	FSW = 0.3119	Class C: nucleus	SPLICING FACTOR PUTATIVE
AT2G30260	Predicted Affinity Capture-MS	FSW = 0.0974	Class C: nucleus	U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G08290	Predicted Affinity Capture-MS interaction prediction	FSW = 0.4762	Class C: nucleus	YLS8 CATALYTIC
AT2G43810	Predicted Phylogenetic profile method Co-expression	FSW = 0.1613	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G03870	Predicted two hybrid two hybrid Co-expression	FSW = 0.1950	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G19120	Predicted Affinity Capture-RNA	FSW = 0.1250	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G59810	Predicted Phylogenetic profile method Co-expression	FSW = 0.2598	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G47640	Predicted two hybrid two hybrid two hybrid two hybrid two hybrid two hybrid in vitro in vitro Affinity Capture-MS Affinity Capture-MS two hybrid interaction prediction Co-expression	FSW = 0.4750	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT3G19840	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2447	Class C: nucleus	FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT3G50670	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.1603	Class C: nucleus	U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G21700	Predicted two hybrid	FSW = 0.0077	Class C: nucleus	SGP2 GTP BINDING
AT2G41500	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3798	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT3G62840	Predicted two hybrid two hybrid in vitro two hybrid two hybrid in vitro	FSW = 0.1500	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LIKE-SM RIBONUCLEOPROTEIN CORE (INTERPROIPR001163) LIKE-SM RIBONUCLEOPROTEIN EUKARYOTIC AND ARCHAEA-TYPE CORE (INTERPROIPR006649) LIKE-SM RIBONUCLEOPROTEIN-RELATED CORE (INTERPROIPR010920) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE (TAIRAT2G476404) HAS 535 BLAST HITS TO 535 PROTEINS IN 164 SPECIES ARCHAE - 2 BACTERIA - 0 METAZOA - 239 FUNGI - 109 PLANTS - 78 VIRUSES - 0 OTHER EUKARYOTES - 107 (SOURCE NCBI BLINK)
AT5G54840	Predicted interaction prediction two hybrid	FSW = 0.0054	Class C: nucleus	SGP1 GTP BINDING
AT1G06960	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0353	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT3G62310	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0821	Class C: nucleus	RNA HELICASE PUTATIVE
AT1G04510	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification Co-expression	FSW = 0.3740	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G06720	Predicted interaction prediction	FSW = 0.0169	Class C: nucleus	IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT2G18740	Predicted two hybrid two hybrid two hybrid Affinity Capture-MS Co-expression	FSW = 0.4652	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT4G30330	Predicted two hybrid Affinity Capture-MS two hybrid two hybrid two hybrid two hybrid in vitro two hybrid in vitro Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4599	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G76860	Predicted Affinity Capture-RNA	FSW = 0.3410	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G21190	Predicted Affinity Capture-RNA	FSW = 0.2679	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G65700	Predicted two hybrid two hybrid Co-expression	FSW = 0.1337	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870	Predicted two hybrid two hybrid two hybrid Phylogenetic profile method Co-expression	FSW = 0.2718	Class C: nucleus	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT1G20580	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.6198	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G28060	Predicted Affinity Capture-MS Co-expression	FSW = 0.3832	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT3G55200	Predicted Affinity Capture-MS interaction prediction	FSW = 0.2408	Unknown	SPLICING FACTOR PUTATIVE
AT1G80070	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.5185	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT2G33340	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification interaction prediction	FSW = 0.3108	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G47250	Predicted Affinity Capture-MS	FSW = 0.0776	Unknown	RNA HELICASE PUTATIVE
AT3G51840	Predicted two hybrid	FSW = 0.0178	Unknown	ACX4 (ACYL-COA OXIDASE 4) ACYL-COA OXIDASE/ OXIDOREDUCTASE
AT4G15900	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1477	Unknown	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G21710	Predicted Affinity Capture-MS	FSW = 0.0382	Unknown	OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE
AT5G09390	Predicted Affinity Capture-MS	FSW = 0.0075	Unknown	CD2-BINDING PROTEIN-RELATED
AT1G17070	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3477	Unknown	D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G60170	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4995	Unknown	EMB1220 (EMBRYO DEFECTIVE 1220)
AT2G19560	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0257	Unknown	EER5 (ENHANCED ETHYLENE RESPONSE 5)
AT3G03340	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3284	Unknown	UNE6 (UNFERTILIZED EMBRYO SAC 6)
AT3G55220	Predicted Affinity Capture-MS	FSW = 0.4715	Unknown	SPLICING FACTOR PUTATIVE
AT4G03430	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3371	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G21660	Predicted Affinity Capture-MS interaction prediction	FSW = 0.4288	Unknown	PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT1G66510	Predicted Affinity Capture-MS	FSW = 0.1860	Unknown	AAR2 PROTEIN FAMILY
AT5G41770	Predicted Affinity Capture-MS	FSW = 0.2728	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G46400	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4770	Unknown	PRP39-2
AT5G06160	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4091	Unknown	ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G11650	Predicted Affinity Capture-MS	FSW = 0.1796	Unknown	RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE
AT1G44910	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1829	Unknown	PROTEIN BINDING
AT1G04080	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1496	Unknown	PRP39 BINDING
AT3G16650	Predicted Affinity Capture-MS	FSW = 0.1763	Unknown	PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2)
AT1G02690	Predicted two hybrid Co-expression	FSW = 0.0183	Unknown	IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT3G19670	Predicted interaction prediction	FSW = 0.0345	Unknown	PROTEIN BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT4G30220 - ( RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) )

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Fasta sequences:

Quick help

FSW

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How to cite