Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G21660 - ( proline-rich spliceosome-associated (PSP) family protein )
52 Proteins interacs with AT4G21660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G07590 | PredictedAffinity Capture-MS | FSW = 0.3514
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT4G02840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4856
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT1G20960 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4381
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5276
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G09770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4022
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G64270 | Predictedin vivoAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4543
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4118
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G55200 | Predictedin vivoin vivoin vivoAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3741
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G33340 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3011
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G46630 | Predictedtwo hybridtwo hybrid | FSW = 0.0139
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G09100 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT5G56290 | Predictedtwo hybridtwo hybrid | FSW = 0.0109
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT2G30260 | PredictedAffinity Capture-MS | FSW = 0.1050
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G05530 | Predictedinteraction prediction | FSW = 0.0129
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT5G08290 | PredictedAffinity Capture-MS | FSW = 0.4800
| Unknown | YLS8 CATALYTIC |
AT2G18510 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridReconstituted Complexin vivoin vivoAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.2249
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G19840 | PredictedAffinity Capture-MSin vitro | FSW = 0.2852
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3132
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT2G41500 | PredictedAffinity Capture-MS | FSW = 0.3446
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G30220 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.4288
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.5544
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT3G11500 | Predictedinteraction prediction | FSW = 0.4865
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
AT1G20580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5043
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G28060 | PredictedAffinity Capture-MS | FSW = 0.3227
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT1G04510 | PredictedAffinity Capture-MSCo-purification | FSW = 0.3148
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G15900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1986
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0046
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT3G55220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivoin vivoin vivoAffinity Capture-MS | FSW = 0.5669
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G07170 | Predictedin vivoAffinity Capture-MSAffinity Capture-MS | FSW = 0.3282
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK) |
AT2G02570 | PredictedAffinity Capture-MS | FSW = 0.1554
| Unknown | NUCLEIC ACID BINDING |
AT2G30000 | Predictedin vivo | FSW = 0.1743
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G071702) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK) |
AT1G14640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.6184
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0641
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT2G32600 | Predictedinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4288
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT3G47120 | PredictedAffinity Capture-MS | FSW = 0.0843
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G60170 | PredictedAffinity Capture-MS | FSW = 0.4337
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT1G70290 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT3G05760 | PredictedAffinity Capture-MS | FSW = 0.2170
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G17660 | PredictedSynthetic Rescue | FSW = 0.1220
| Unknown | AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT4G03430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3261
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT5G06160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5111
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G41770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.2730
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G46400 | PredictedAffinity Capture-MS | FSW = 0.4452
| Unknown | PRP39-2 |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT3G13210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1008
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G16650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1897
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT1G20920 | Predictedinterologs mapping | FSW = 0.0034
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G15780 | Predictedinteraction predictioninterologs mappingtwo hybrid | FSW = 0.0043
| Unknown | UNKNOWN PROTEIN |
AT5G61150 | Predictedtwo hybridinteraction prediction | FSW = 0.0033
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454