Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G23930 - ( SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) )
44 Proteins interacs with AT2G23930| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G07590
   | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4923
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT4G02840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5684
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT1G20960
| PredictedCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.5031
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G09760
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5599
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT5G65430
| PredictedAffinity Capture-MS | FSW = 0.0281
| Class C:nucleus | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G09770
| PredictedAffinity Capture-MS | FSW = 0.4050
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G64270
| PredictedAffinity Capture-MS | FSW = 0.4059
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT5G08290
| PredictedAffinity Capture-MS | FSW = 0.5365
| Class C:nucleus | YLS8 CATALYTIC |
| AT5G27720
| PredictedAffinity Capture-MS | FSW = 0.2272
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT3G11500
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7053
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4137
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT3G19840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2960
| Class C:nucleus | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
| AT3G50670
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1277
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G20580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.6731
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G28060
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4072
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT1G04510
| PredictedAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3840
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G13980
| Predictedbiochemical | FSW = 0.0064
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G41500
| PredictedAffinity Capture-MS | FSW = 0.3840
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT4G30330
| PredictedAffinity Capture-MStwo hybridtwo hybridin vitroAffinity Capture-MSin vitrotwo hybrid | FSW = 0.5176
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT2G18740
| PredictedAffinity Capture-MStwo hybridCo-expression | FSW = 0.4905
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT5G48870
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1630
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
| AT2G33340
| PredictedCo-purificationAffinity Capture-MS | FSW = 0.3179
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G80070
| PredictedAffinity Capture-MS | FSW = 0.5079
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT3G55200 | PredictedAffinity Capture-MS | FSW = 0.3930
| Unknown | SPLICING FACTOR PUTATIVE |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | PSF2 |
| AT4G15900
| PredictedAffinity Capture-MS | FSW = 0.1923
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G14640
| PredictedAffinity Capture-MS | FSW = 0.5786
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT1G17070
| PredictedAffinity Capture-MS | FSW = 0.3890
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
| AT1G60170
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5102
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT2G19560
| PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | EER5 (ENHANCED ETHYLENE RESPONSE 5) |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT2G21250
| PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT3G06483
| Predictedbiochemical | FSW = 0.0073
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
| AT2G32600
| PredictedAffinity Capture-MS | FSW = 0.3842
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT3G03340
| PredictedAffinity Capture-MS | FSW = 0.3165
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
| AT3G55220
| PredictedAffinity Capture-MS | FSW = 0.5544
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G03430
| PredictedAffinity Capture-MS | FSW = 0.3279
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT4G21660
| PredictedAffinity Capture-MS | FSW = 0.5544
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G06160
| PredictedAffinity Capture-MSCo-expression | FSW = 0.5008
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G41770
| PredictedAffinity Capture-MS | FSW = 0.3051
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT1G44910
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1964
| Unknown | PROTEIN BINDING |
| AT3G13210
| PredictedAffinity Capture-MS | FSW = 0.1514
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT3G16650
| PredictedAffinity Capture-MS | FSW = 0.2158
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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