Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13210 - ( crooked neck protein putative / cell cycle protein putative )
63 Proteins interacs with AT3G13210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.0908
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G26590 | Predictedbiochemical | FSW = 0.0267
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0418
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G13450 | PredictedPhenotypic Enhancement | FSW = 0.0922
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT1G20960 | PredictedAffinity Capture-MS | FSW = 0.1502
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09770 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1891
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.1090
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G55920 | PredictedPhenotypic Suppression | FSW = 0.0505
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT1G22170 | PredictedSynthetic Lethality | FSW = 0.1547
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1596
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G55200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0948
| Unknown | SPLICING FACTOR PUTATIVE |
AT5G06290 | Predictedbiochemical | FSW = 0.0279
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.0780
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G48860 | PredictedPhenotypic Suppression | FSW = 0.0581
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT3G18790 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1626
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT2G47250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0711
| Unknown | RNA HELICASE PUTATIVE |
AT1G80190 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT2G32670 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2229
| Unknown | ATVAMP725 |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.1037
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0391
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.1514
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT1G04510 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationsynthetic growth defecttwo hybrid | FSW = 0.1399
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G25340 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1398
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT3G26560 | Predictedtwo hybridsynthetic growth defecttwo hybrid | FSW = 0.1481
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT3G10920 | Predictedinterologs mapping | FSW = 0.0137
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.0930
| Unknown | ARA6 GTP BINDING / GTPASE |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.1501
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT3G60360 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.1933
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT2G37560 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0133
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT1G02100 | PredictedSynthetic Lethality | FSW = 0.0541
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G13580 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1432
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G26690 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1413
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G34580 | PredictedbiochemicalAffinity Capture-MSAffinity Capture-MSReconstituted Complexbiochemical | FSW = 0.0549
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G31260 | PredictedPhenotypic Enhancement | FSW = 0.0659
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.0496
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G09640 | PredictedPhenotypic Enhancement | FSW = 0.0651
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G12200 | PredictedPhenotypic Enhancement | FSW = 0.0570
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G11240 | PredictedPhenotypic Enhancement | FSW = 0.0993
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G47290 | PredictedPhenotypic Enhancement | FSW = 0.0457
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0239
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT5G06600 | PredictedbiochemicalReconstituted Complex | FSW = 0.0947
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G54940 | PredictedPhenotypic Enhancement | FSW = 0.1719
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT3G62960 | PredictedPhenotypic Enhancement | FSW = 0.0248
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.0561
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G01430 | PredictedReconstituted Complex | FSW = 0.1069
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G14180 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1491
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G26250 | PredictedPhenotypic Enhancement | FSW = 0.0535
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.0720
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.1386
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT3G16650 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1828
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT5G28740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2139
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT1G80930 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2017
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT1G17070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1896
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT4G21660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1008
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT1G17130 | PredictedAffinity Capture-MS | FSW = 0.1648
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT4G24490 | Predictedinterologs mapping | FSW = 0.0312
| Unknown | PROTEIN PRENYLTRANSFERASE |
AT1G44910 | PredictedReconstituted Complextwo hybrid | FSW = 0.0381
| Unknown | PROTEIN BINDING |
AT5G13010 | Predictedsynthetic growth defect | FSW = 0.0884
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G10580 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.1675
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G07170 | Predictedsynthetic growth defect | FSW = 0.0725
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK) |
AT1G63460 | Predictedtwo hybrid | FSW = 0.0346
| Unknown | GLUTATHIONE PEROXIDASE PUTATIVE |
AT5G41770 | PredictedPhylogenetic profile method | FSW = 0.1924
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G45990 | PredictedPhylogenetic profile method | FSW = 0.0537
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454