Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G04510 - ( transducin family protein / WD-40 repeat family protein )

94 Proteins interacs with AT1G04510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G18165

Experimental

FSW = 0.1313

Class A:

nucleus

Class B:

unclear

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

MOS4 (MODIFIER OF SNC14)
AT5G55280

Experimental

FSW = 0.0127

Class B:

plastid

nucleus

Class D:

cytosol (p = 0.67)

FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT5G15200

Predicted

Co-purification

Co-expression

FSW = 0.0294

Class C:

nucleus

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT3G07590

Predicted

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.3585

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT3G60770

Predicted

Co-purification

Co-expression

FSW = 0.0057

Class C:

nucleus

40S RIBOSOMAL PROTEIN S13 (RPS13A)
AT1G20960

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.4429

Class C:

nucleus

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G72370

Predicted

Co-purification

Co-expression

FSW = 0.0132

Class C:

nucleus

P40 STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G09760

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.3695

Class C:

nucleus

U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G09770

Predicted

two hybrid

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

far western blotting

two hybrid

FSW = 0.3350

Class C:

nucleus

ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT3G20550

Predicted

Co-purification

FSW = 0.0046

Class C:

nucleus

DDL (DAWDLE)
AT5G64270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.2934

Class C:

nucleus

SPLICING FACTOR PUTATIVE
AT5G08290

Predicted

Co-purification

FSW = 0.3472

Class C:

nucleus

YLS8 CATALYTIC
AT2G18510

Predicted

Co-purification

FSW = 0.0749

Class C:

nucleus

EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G23930

Predicted

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.3840

Class C:

nucleus

SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT5G27720

Predicted

Co-purification

FSW = 0.1500

Class C:

nucleus

EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G06960

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.0281

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT2G47640

Predicted

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.2636

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT3G50670

Predicted

Co-purification

FSW = 0.0707

Class C:

nucleus

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G25630

Predicted

Co-purification

Co-expression

FSW = 0.0202

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT2G41500

Predicted

Affinity Capture-Western

Co-purification

Co-expression

FSW = 0.2797

Class C:

nucleus

EMB2776 NUCLEOTIDE BINDING
AT1G20580

Predicted

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.4461

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G28060

Predicted

Co-purification

Co-expression

FSW = 0.2660

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT1G65470

Predicted

Phenotypic Enhancement

Co-expression

FSW = 0.0159

Class C:

nucleus

FAS1 (FASCIATA 1) HISTONE BINDING
AT2G43810

Predicted

Co-purification

Co-expression

FSW = 0.1107

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT4G30220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.3740

Class C:

nucleus

RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT2G03870

Predicted

Co-purification

FSW = 0.1338

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G19120

Predicted

Co-purification

FSW = 0.0921

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G18740

Predicted

Co-purification

Co-expression

FSW = 0.3377

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G03330

Predicted

Co-purification

FSW = 0.1950

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G21190

Predicted

Co-purification

FSW = 0.1518

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G36160

Predicted

Co-purification

Co-expression

FSW = 0.0046

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G31610

Predicted

Co-purification

FSW = 0.0045

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3A)
AT2G17360

Predicted

Co-purification

Co-expression

FSW = 0.0178

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G22780

Predicted

Co-purification

Co-expression

FSW = 0.0016

Unknown

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270

Predicted

Co-purification

FSW = 0.0212

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G80350

Predicted

Gene fusion method

FSW = 0.0435

Unknown

ERH3 (ECTOPIC ROOT HAIR 3) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G18080

Predicted

Co-purification

Co-expression

FSW = 0.0026

Unknown

ATARCA NUCLEOTIDE BINDING
AT2G09990

Predicted

Co-purification

FSW = 0.0229

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT1G58380

Predicted

Co-purification

FSW = 0.0110

Unknown

XW6 STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G16030

Predicted

Co-purification

FSW = 0.0033

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT3G04840

Predicted

Co-purification

FSW = 0.0047

Unknown

40S RIBOSOMAL PROTEIN S3A (RPS3AA)
AT3G55200Predicted

Affinity Capture-MS

Co-purification

FSW = 0.2077

Unknown

SPLICING FACTOR PUTATIVE
AT3G18790

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Synthetic Lethality

Co-expression

FSW = 0.1159

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK)
AT2G33340

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4253

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G80070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.4414

Unknown

SUS2 (ABNORMAL SUSPENSOR 2)
AT1G22170

Predicted

Co-purification

FSW = 0.0332

Unknown

PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT5G66210

Predicted

Gene fusion method

FSW = 0.0136

Unknown

CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G03540

Predicted

two hybrid

FSW = 0.0190

Unknown

ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING
AT1G15930

Predicted

Co-purification

Co-expression

FSW = 0.0408

Unknown

40S RIBOSOMAL PROTEIN S12 (RPS12A)
AT3G02080

Predicted

Co-purification

Co-expression

FSW = 0.0118

Unknown

40S RIBOSOMAL PROTEIN S19 (RPS19A)
AT2G42520

Predicted

Co-purification

FSW = 0.0147

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT3G26560

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1246

Unknown

ATP-DEPENDENT RNA HELICASE PUTATIVE
AT4G15900

Predicted

Affinity Capture-MS

FSW = 0.1566

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G20850

Predicted

Synthetic Rescue

FSW = 0.0094

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT5G05260

Predicted

Gene fusion method

FSW = 0.1188

Unknown

CYP79A2 (CYTOCHROME P450 79A2) OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN / OXYGEN BINDING
AT3G16650

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.2281

Unknown

PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2)
AT1G10580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1488

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G13210

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

synthetic growth defect

two hybrid

FSW = 0.1399

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT4G21660

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.3148

Unknown

PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT4G21110

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.1384

Unknown

G10 FAMILY PROTEIN
AT1G17130

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1179

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT1G01350

Predicted

Affinity Capture-MS

FSW = 0.0367

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G47120

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.0407

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G32600

Predicted

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.2361

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT1G14640

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.2890

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT5G06160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.3021

Unknown

ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G65660

Predicted

Affinity Capture-MS

FSW = 0.0799

Unknown

SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING
AT5G28740

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

two hybrid

Co-expression

FSW = 0.2436

Unknown

TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT1G80930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2055

Unknown

MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT1G17070

Predicted

Affinity Capture-MS

FSW = 0.2713

Unknown

D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G44910

Predicted

Co-purification

FSW = 0.1530

Unknown

PROTEIN BINDING
AT1G04080

Predicted

Co-purification

Co-expression

FSW = 0.0962

Unknown

PRP39 BINDING
AT1G11650

Predicted

Co-purification

FSW = 0.0895

Unknown

RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE
AT3G03340

Predicted

Co-purification

FSW = 0.1613

Unknown

UNE6 (UNFERTILIZED EMBRYO SAC 6)
AT5G16260

Predicted

Co-purification

Co-expression

FSW = 0.0686

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G03430

Predicted

Co-purification

FSW = 0.2165

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT1G60170

Predicted

Co-purification

FSW = 0.3493

Unknown

EMB1220 (EMBRYO DEFECTIVE 1220)
AT3G05760

Predicted

Co-purification

FSW = 0.1607

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT4G12600

Predicted

Co-purification

Co-expression

FSW = 0.0345

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT4G22290

Predicted

Co-purification

FSW = 0.0102

Unknown

UBIQUITIN THIOLESTERASE
AT2G45810

Predicted

Co-purification

FSW = 0.0672

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G16350

Predicted

Co-purification

Co-expression

FSW = 0.0179

Unknown

INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G10350

Predicted

Co-purification

FSW = 0.0122

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G45030Predicted

Co-purification

FSW = 0.0103

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20A)
AT1G52640

Predicted

Gene fusion method

FSW = 0.0714

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G78570

Predicted

Gene fusion method

FSW = 0.0275

Unknown

RHM1 (RHAMNOSE BIOSYNTHESIS 1) UDP-L-RHAMNOSE SYNTHASE/ UDP-GLUCOSE 46-DEHYDRATASE/ CATALYTIC
AT3G20080

Predicted

Gene fusion method

FSW = 0.0713

Unknown

CYP705A15 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT5G19360

Predicted

Gene fusion method

FSW = 0.0208

Unknown

CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G15200

Predicted

Gene fusion method

FSW = 0.0714

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G20940

Predicted

Gene fusion method

FSW = 0.1097

Unknown

CYP705A30 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT4G31970

Predicted

Gene fusion method

FSW = 0.0950

Unknown

CYP82C2 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT3G59730

Predicted

Gene fusion method

FSW = 0.0412

Unknown

RECEPTOR LECTIN KINASE PUTATIVE
AT1G63710

Predicted

Gene fusion method

FSW = 0.1188

Unknown

CYP86A7 FATTY ACID (OMEGA-1)-HYDROXYLASE/ OXYGEN BINDING
AT5G43920

Predicted

Gene fusion method

FSW = 0.0909

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454