Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G04510 - ( transducin family protein / WD-40 repeat family protein )
94 Proteins interacs with AT1G04510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G18165 | Experimental | FSW = 0.1313
| Class A:nucleusClass B:unclearClass D:nucleus (p = 0.78)cytosol (p = 0.67) | MOS4 (MODIFIER OF SNC14) |
AT5G55280 | Experimental | FSW = 0.0127
| Class B:plastidnucleusClass D:cytosol (p = 0.67) | FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE |
AT5G15200 | PredictedCo-purificationCo-expression | FSW = 0.0294
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT3G07590 | PredictedAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3585
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT3G60770 | PredictedCo-purificationCo-expression | FSW = 0.0057
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S13 (RPS13A) |
AT1G20960 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.4429
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G72370 | PredictedCo-purificationCo-expression | FSW = 0.0132
| Class C:nucleus | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G09760 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3695
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G09770 | Predictedtwo hybridCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationfar western blottingtwo hybrid | FSW = 0.3350
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G20550 | PredictedCo-purification | FSW = 0.0046
| Class C:nucleus | DDL (DAWDLE) |
AT5G64270 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2934
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
AT5G08290 | PredictedCo-purification | FSW = 0.3472
| Class C:nucleus | YLS8 CATALYTIC |
AT2G18510 | PredictedCo-purification | FSW = 0.0749
| Class C:nucleus | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G23930 | PredictedAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3840
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT5G27720 | PredictedCo-purification | FSW = 0.1500
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G06960 | PredictedAffinity Capture-MSCo-purification | FSW = 0.0281
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G47640 | PredictedAffinity Capture-MSCo-purificationCo-expression | FSW = 0.2636
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT3G50670 | PredictedCo-purification | FSW = 0.0707
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G25630 | PredictedCo-purificationCo-expression | FSW = 0.0202
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT2G41500 | PredictedAffinity Capture-WesternCo-purificationCo-expression | FSW = 0.2797
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
AT1G20580 | PredictedAffinity Capture-MSCo-purificationCo-expression | FSW = 0.4461
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G28060 | PredictedCo-purificationCo-expression | FSW = 0.2660
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT1G65470 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.0159
| Class C:nucleus | FAS1 (FASCIATA 1) HISTONE BINDING |
AT2G43810 | PredictedCo-purificationCo-expression | FSW = 0.1107
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT4G30220 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3740
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT2G03870 | PredictedCo-purification | FSW = 0.1338
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G19120 | PredictedCo-purification | FSW = 0.0921
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G18740 | PredictedCo-purificationCo-expression | FSW = 0.3377
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT1G03330 | PredictedCo-purification | FSW = 0.1950
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT1G21190 | PredictedCo-purification | FSW = 0.1518
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G36160 | PredictedCo-purificationCo-expression | FSW = 0.0046
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT2G31610 | PredictedCo-purification | FSW = 0.0045
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
AT2G17360 | PredictedCo-purificationCo-expression | FSW = 0.0178
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT1G22780 | PredictedCo-purificationCo-expression | FSW = 0.0016
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37270 | PredictedCo-purification | FSW = 0.0212
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G80350 | PredictedGene fusion method | FSW = 0.0435
| Unknown | ERH3 (ECTOPIC ROOT HAIR 3) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G18080 | PredictedCo-purificationCo-expression | FSW = 0.0026
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT2G09990 | PredictedCo-purification | FSW = 0.0229
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT1G58380 | PredictedCo-purification | FSW = 0.0110
| Unknown | XW6 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G16030 | PredictedCo-purification | FSW = 0.0033
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT3G04840 | PredictedCo-purification | FSW = 0.0047
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT3G55200 | PredictedAffinity Capture-MSCo-purification | FSW = 0.2077
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G18790 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic LethalityCo-expression | FSW = 0.1159
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT2G33340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4253
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4414
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT1G22170 | PredictedCo-purification | FSW = 0.0332
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT5G66210 | PredictedGene fusion method | FSW = 0.0136
| Unknown | CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G03540 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
AT1G15930 | PredictedCo-purificationCo-expression | FSW = 0.0408
| Unknown | 40S RIBOSOMAL PROTEIN S12 (RPS12A) |
AT3G02080 | PredictedCo-purificationCo-expression | FSW = 0.0118
| Unknown | 40S RIBOSOMAL PROTEIN S19 (RPS19A) |
AT2G42520 | PredictedCo-purification | FSW = 0.0147
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT3G26560 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1246
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT4G15900 | PredictedAffinity Capture-MS | FSW = 0.1566
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G20850 | PredictedSynthetic Rescue | FSW = 0.0094
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G05260 | PredictedGene fusion method | FSW = 0.1188
| Unknown | CYP79A2 (CYTOCHROME P450 79A2) OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN / OXYGEN BINDING |
AT3G16650 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2281
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT1G10580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1488
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G13210 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationsynthetic growth defecttwo hybrid | FSW = 0.1399
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT4G21660 | PredictedAffinity Capture-MSCo-purification | FSW = 0.3148
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT4G21110 | PredictedAffinity Capture-MSCo-purification | FSW = 0.1384
| Unknown | G10 FAMILY PROTEIN |
AT1G17130 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1179
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G01350 | PredictedAffinity Capture-MS | FSW = 0.0367
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G47120 | PredictedAffinity Capture-MSCo-purification | FSW = 0.0407
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G32600 | PredictedAffinity Capture-MSCo-purificationCo-expression | FSW = 0.2361
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G14640 | PredictedAffinity Capture-MSCo-purification | FSW = 0.2890
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT5G06160 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3021
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G65660 | PredictedAffinity Capture-MS | FSW = 0.0799
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
AT5G28740 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationtwo hybridCo-expression | FSW = 0.2436
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT1G80930 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2055
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT1G17070 | PredictedAffinity Capture-MS | FSW = 0.2713
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G44910 | PredictedCo-purification | FSW = 0.1530
| Unknown | PROTEIN BINDING |
AT1G04080 | PredictedCo-purificationCo-expression | FSW = 0.0962
| Unknown | PRP39 BINDING |
AT1G11650 | PredictedCo-purification | FSW = 0.0895
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
AT3G03340 | PredictedCo-purification | FSW = 0.1613
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT5G16260 | PredictedCo-purificationCo-expression | FSW = 0.0686
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G03430 | PredictedCo-purification | FSW = 0.2165
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT1G60170 | PredictedCo-purification | FSW = 0.3493
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT3G05760 | PredictedCo-purification | FSW = 0.1607
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G12600 | PredictedCo-purificationCo-expression | FSW = 0.0345
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT4G22290 | PredictedCo-purification | FSW = 0.0102
| Unknown | UBIQUITIN THIOLESTERASE |
AT2G45810 | PredictedCo-purification | FSW = 0.0672
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G16350 | PredictedCo-purificationCo-expression | FSW = 0.0179
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT1G10350 | PredictedCo-purification | FSW = 0.0122
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G45030 | PredictedCo-purification | FSW = 0.0103
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20A) |
AT1G52640 | PredictedGene fusion method | FSW = 0.0714
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G78570 | PredictedGene fusion method | FSW = 0.0275
| Unknown | RHM1 (RHAMNOSE BIOSYNTHESIS 1) UDP-L-RHAMNOSE SYNTHASE/ UDP-GLUCOSE 46-DEHYDRATASE/ CATALYTIC |
AT3G20080 | PredictedGene fusion method | FSW = 0.0713
| Unknown | CYP705A15 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT5G19360 | PredictedGene fusion method | FSW = 0.0208
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G15200 | PredictedGene fusion method | FSW = 0.0714
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G20940 | PredictedGene fusion method | FSW = 0.1097
| Unknown | CYP705A30 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT4G31970 | PredictedGene fusion method | FSW = 0.0950
| Unknown | CYP82C2 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G59730 | PredictedGene fusion method | FSW = 0.0412
| Unknown | RECEPTOR LECTIN KINASE PUTATIVE |
AT1G63710 | PredictedGene fusion method | FSW = 0.1188
| Unknown | CYP86A7 FATTY ACID (OMEGA-1)-HYDROXYLASE/ OXYGEN BINDING |
AT5G43920 | PredictedGene fusion method | FSW = 0.0909
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454