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AT2G17360 - ( 40S ribosomal protein S4 (RPS4A) )

165 Proteins interacs with AT2G17360

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.2513	Class C: vacuole plastid plasma membrane	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.2621	Class C: vacuole plastid plasma membrane	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2285	Class C: vacuole plastid plasma membrane	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.2138	Class C: vacuole plastid plasma membrane	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G67500	Predicted Affinity Capture-MS	FSW = 0.0681	Class C: vacuole plastid	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.3330	Class C: vacuole plastid	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.1920	Class C: vacuole plastid	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.1932	Class C: vacuole plasma membrane	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.1844	Class C: vacuole plasma membrane	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.2537	Class C: vacuole plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.3007	Class C: vacuole plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.1682	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT5G27850	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1006	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT1G31780	Predicted interologs mapping	FSW = 0.0033	Class C: vacuole	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT5G07090	Predicted Phylogenetic profile method Co-expression	FSW = 0.0555	Class C: vacuole	40S RIBOSOMAL PROTEIN S4 (RPS4B)
AT1G14320	Predicted Phenotypic Enhancement	FSW = 0.0361	Class C: vacuole	SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.3789	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.1990	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G48170	Predicted biochemical biochemical Affinity Capture-Western Affinity Capture-Western two hybrid biochemical Affinity Capture-MS	FSW = 0.0578	Class C: plastid	ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G23310	Predicted Affinity Capture-MS	FSW = 0.0032	Class C: plastid	GGT1 (GLUTAMATEGLYOXYLATE AMINOTRANSFERASE) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT5G64270	Predicted Affinity Capture-MS	FSW = 0.0094	Class C: plastid	SPLICING FACTOR PUTATIVE
AT5G59690	Predicted Affinity Capture-MS	FSW = 0.0448	Class C: plastid	HISTONE H4
AT5G54770	Predicted Phenotypic Enhancement	FSW = 0.0588	Class C: plastid	THI1 PROTEIN HOMODIMERIZATION
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.2576	Class C: plastid	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G06530	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1933	Class C: plastid	BINDING
AT3G56160	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.0547	Class C: plastid	BILE ACIDSODIUM SYMPORTER
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.1590	Class C: plasma membrane	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT1G45145	Predicted Synthetic Rescue	FSW = 0.0272	Class C: plasma membrane	ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.1458	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT3G11964	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1693	Class C: plasma membrane	RNA BINDING
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.3620	Class C: plasma membrane	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.1972	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT1G27450	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.0582	Class C: plasma membrane	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE
AT1G04750	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.1010	Class C: plasma membrane	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G60790	Predicted Affinity Capture-MS	FSW = 0.0585	Class C: plasma membrane	ATGCN1 TRANSPORTER
AT2G44690	Predicted Synthetic Lethality	FSW = 0.0215	Class C: plasma membrane	ARAC9 GTP BINDING
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.1858	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1292	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT3G53430	Predicted Affinity Capture-MS	FSW = 0.0878	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT4G11420	Predicted Affinity Capture-MS	FSW = 0.0450	Class C: plasma membrane	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.1847	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.2758	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G22780	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0202	Class C: plasma membrane	ADAPTIN FAMILY PROTEIN
AT1G12920	Predicted Affinity Capture-MS	FSW = 0.0125	Class C: plasma membrane	ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR
AT4G18800	Predicted Synthetic Rescue	FSW = 0.0396	Class C: plasma membrane	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT3G11730	Predicted Affinity Capture-MS	FSW = 0.0100	Class C: plasma membrane	ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.2302	Unknown	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G48545	Predicted Synthetic Rescue	FSW = 0.0209	Unknown	HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN
AT1G77840	Predicted Affinity Capture-MS	FSW = 0.1239	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT5G57015	Predicted Affinity Capture-MS	FSW = 0.0400	Unknown	CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G54280	Predicted Affinity Capture-MS	FSW = 0.0272	Unknown	RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G57150	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1570	Unknown	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.2599	Unknown	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT5G58420	Predicted Affinity Capture-MS Phylogenetic profile method Co-expression	FSW = 0.4277	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT3G57000	Predicted Affinity Capture-MS	FSW = 0.1956	Unknown	NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.2469	Unknown	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT2G28740	Predicted Affinity Capture-MS	FSW = 0.0069	Unknown	HIS4 DNA BINDING
AT3G16810	Predicted Affinity Capture-MS	FSW = 0.1020	Unknown	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G54910	Predicted Affinity Capture-MS	FSW = 0.0892	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G63810	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2124	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT1G06960	Predicted synthetic growth defect	FSW = 0.0328	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT3G05060	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1658	Unknown	SAR DNA-BINDING PROTEIN PUTATIVE
AT3G62310	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1381	Unknown	RNA HELICASE PUTATIVE
AT3G12860	Predicted Affinity Capture-MS	FSW = 0.2291	Unknown	NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT1G04510	Predicted Co-purification Co-expression	FSW = 0.0178	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G18040	Predicted Affinity Capture-MS	FSW = 0.0599	Unknown	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT5G60980	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0476	Unknown	NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G21700	Predicted Phenotypic Enhancement	FSW = 0.1127	Unknown	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT3G18130	Predicted Affinity Capture-MS	FSW = 0.1030	Unknown	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.0093	Unknown	HISTONE H2B PUTATIVE
AT4G05410	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1696	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G66540	Predicted Affinity Capture-MS	FSW = 0.1975	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT4G10040	Predicted interologs mapping interologs mapping	FSW = 0.0320	Unknown	CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT1G64880	Predicted Phenotypic Suppression	FSW = 0.1003	Unknown	RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT2G14580	Predicted Synthetic Lethality	FSW = 0.0145	Unknown	ATPRB1
AT2G03120	Predicted Affinity Capture-MS	FSW = 0.0227	Unknown	ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT5G22100	Predicted Affinity Capture-MS	FSW = 0.1111	Unknown	RNA CYCLASE FAMILY PROTEIN
AT3G13900	Predicted biochemical Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western two hybrid biochemical	FSW = 0.1097	Unknown	ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.2366	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.3046	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT4G17620	Predicted Affinity Capture-MS	FSW = 0.0976	Unknown	GLYCINE-RICH PROTEIN
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.3951	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT4G39200	Predicted synthetic growth defect	FSW = 0.0405	Unknown	40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0377	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G47990	Predicted Affinity Capture-MS	FSW = 0.1799	Unknown	SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT1G10490	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2822	Unknown	UNKNOWN PROTEIN
AT4G02570	Predicted interologs mapping	FSW = 0.0010	Unknown	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT1G05180	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.0981	Unknown	AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT1G19730	Predicted Affinity Capture-MS	FSW = 0.0307	Unknown	ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G77670	Predicted two hybrid two hybrid	FSW = 0.0125	Unknown	AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN
AT3G05000	Predicted two hybrid two hybrid	FSW = 0.0215	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT4G36630	Predicted two hybrid two hybrid	FSW = 0.0227	Unknown	EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR
AT1G06720	Predicted Affinity Capture-MS	FSW = 0.1599	Unknown	INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G10210	Predicted Phenotypic Enhancement	FSW = 0.0859	Unknown	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G16350	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0753	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G26690	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Suppression Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement synthetic growth defect Phenotypic Suppression Synthetic Lethality Synthetic Rescue	FSW = 0.0691	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G44180	Predicted synthetic growth defect	FSW = 0.0915	Unknown	AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G55300	Predicted Synthetic Rescue	FSW = 0.0334	Unknown	TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G66590	Predicted synthetic growth defect Synthetic Rescue	FSW = 0.1303	Unknown	COX19 FAMILY PROTEIN
AT2G17250	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2155	Unknown	EMB2762 (EMBRYO DEFECTIVE 2762)
AT1G04160	Predicted Synthetic Lethality	FSW = 0.0030	Unknown	XIB (MYOSIN XI B) MOTOR
AT1G04730	Predicted Synthetic Lethality	FSW = 0.0096	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G08880	Predicted Affinity Capture-MS	FSW = 0.0246	Unknown	H2AXA DNA BINDING
AT1G09150	Predicted Affinity Capture-MS	FSW = 0.0209	Unknown	PSEUDOURIDINE SYNTHASE AND ARCHAEOSINE TRANSGLYCOSYLASE (PUA) DOMAIN-CONTAINING PROTEIN
AT1G15440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1656	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G27040	Predicted Synthetic Lethality	FSW = 0.0443	Unknown	NITRATE TRANSPORTER PUTATIVE
AT1G27080	Predicted two hybrid	FSW = 0.0283	Unknown	NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT1G31660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2480	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1596	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G47830	Predicted Phenotypic Enhancement	FSW = 0.1276	Unknown	CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G55060	Predicted Synthetic Lethality	FSW = 0.0660	Unknown	UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G69070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2257	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G74810	Predicted Synthetic Rescue	FSW = 0.0413	Unknown	BOR5 ANION EXCHANGER
AT1G80500	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0456	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT2G34357	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2492	Unknown	BINDING
AT2G44580	Predicted Synthetic Lethality	FSW = 0.0047	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G10780	Predicted Affinity Capture-MS	FSW = 0.0209	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT3G11450	Predicted Affinity Capture-MS	FSW = 0.0674	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.0597	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G24010	Predicted Phenotypic Enhancement	FSW = 0.0933	Unknown	ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G24080	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1535	Unknown	KRR1 FAMILY PROTEIN
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.2090	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G42660	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0026	Unknown	NUCLEOTIDE BINDING
AT3G47610	Predicted Synthetic Lethality	FSW = 0.1183	Unknown	TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT3G51270	Predicted Affinity Capture-MS	FSW = 0.1062	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G60240	Predicted Affinity Capture-MS	FSW = 0.0629	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G12460	Predicted Affinity Capture-MS	FSW = 0.0130	Unknown	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING
AT4G19210	Predicted Affinity Capture-MS	FSW = 0.1564	Unknown	ATRLI2 TRANSPORTER
AT4G25950	Predicted Synthetic Lethality interologs mapping	FSW = 0.0606	Unknown	VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G27130	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.1017	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G28200	Predicted Affinity Capture-MS	FSW = 0.1853	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT5G08420	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2406	Unknown	RNA BINDING
AT5G09290	Predicted Phenotypic Suppression	FSW = 0.0217	Unknown	3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE
AT5G15750	Predicted Affinity Capture-MS	FSW = 0.1497	Unknown	RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G20340	Predicted Phenotypic Enhancement	FSW = 0.1067	Unknown	BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G22110	Predicted Affinity Capture-MS	FSW = 0.0294	Unknown	ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING
AT5G35930	Predicted Affinity Capture-MS	FSW = 0.0136	Unknown	AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.0443	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G45620	Predicted Phenotypic Enhancement Phenotypic Enhancement Synthetic Rescue synthetic growth defect	FSW = 0.0905	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G46190	Predicted Affinity Capture-MS	FSW = 0.0506	Unknown	KH DOMAIN-CONTAINING PROTEIN
AT5G60340	Predicted Synthetic Rescue	FSW = 0.0236	Unknown	MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN
AT5G61330	Predicted Affinity Capture-MS	FSW = 0.0938	Unknown	RRNA PROCESSING PROTEIN-RELATED
AT5G66100	Predicted Affinity Capture-MS	FSW = 0.0810	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT5G66610	Predicted synthetic growth defect	FSW = 0.0334	Unknown	DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING
AT2G23820	Predicted Phenotypic Suppression	FSW = 0.0257	Unknown	METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT2G37420	Predicted synthetic growth defect	FSW = 0.0310	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT2G46710	Predicted Synthetic Rescue	FSW = 0.0053	Unknown	RAC GTPASE ACTIVATING PROTEIN PUTATIVE
AT3G02320	Predicted Synthetic Lethality	FSW = 0.0529	Unknown	RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE
AT3G24495	Predicted Phenotypic Enhancement	FSW = 0.0391	Unknown	MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT3G45240	Predicted synthetic growth defect	FSW = 0.0848	Unknown	GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.1625	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G04950	Predicted Affinity Capture-MS	FSW = 0.0130	Unknown	THIOREDOXIN FAMILY PROTEIN
AT4G14320	Predicted Phenotypic Enhancement	FSW = 0.0270	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB)
AT4G19880	Predicted interologs mapping	FSW = 0.0284	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT4G21490	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.1301	Unknown	NDB3 NADH DEHYDROGENASE
AT5G01640	Predicted interologs mapping	FSW = 0.0136	Unknown	PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5)
AT5G11500	Predicted interologs mapping	FSW = 0.0651	Unknown	UNKNOWN PROTEIN
AT5G14060	Predicted synthetic growth defect	FSW = 0.0277	Unknown	CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G16170	Predicted synthetic growth defect	FSW = 0.0703	Unknown	UNKNOWN PROTEIN
AT5G16980	Predicted Phenotypic Suppression	FSW = 0.1218	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G20560	Predicted Reconstituted Complex biochemical	FSW = 0.0283	Unknown	BETA-13-GLUCANASE PUTATIVE
AT5G38030	Predicted Synthetic Rescue	FSW = 0.0299	Unknown	MATE EFFLUX FAMILY PROTEIN
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.2231	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G71350	Predicted Affinity Capture-MS	FSW = 0.0390	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT3G13640	Predicted Affinity Capture-MS	FSW = 0.0631	Unknown	ATRLI1 TRANSPORTER

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G17360 - ( 40S ribosomal protein S4 (RPS4A) )

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