Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12920 - ( ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) translation release factor )

25 Proteins interacs with AT1G12920
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.0125

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G52140Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0282

Class C:

plasma membrane

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.0060

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G47010

Predicted

interaction prediction

Affinity Capture-Western

Synthetic Rescue

FSW = 0.0264

Class C:

plasma membrane

LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT4G11420

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0424

Class C:

plasma membrane

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT3G53110

Predicted

Affinity Capture-Western

interologs mapping

FSW = 0.0365

Class C:

plasma membrane

LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE
AT5G15680

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0173

Class C:

plasma membrane

BINDING
AT5G20920

Predicted

Affinity Capture-MS

FSW = 0.0646

Class C:

plasma membrane

EIF2 BETA TRANSLATION INITIATION FACTOR
AT5G41790

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0108

Unknown

CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT1G18070

Predicted

interaction prediction

two hybrid

two hybrid

two hybrid

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Phenotypic Enhancement

interologs mapping

interologs mapping

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Reconstituted Complex

Affinity Capture-MS

two hybrid

Affinity Capture-Western

biochemical

FSW = 0.1121

Unknown

EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE
AT2G01690

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0091

Unknown

BINDING
AT1G64330

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0260

Unknown

MYOSIN HEAVY CHAIN-RELATED
AT1G17745

Predicted

two hybrid

interaction prediction

FSW = 0.0110

Unknown

PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT4G30990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0111

Unknown

BINDING
AT5G40820

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0179

Unknown

ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT5G47880

Predicted

Shared biological function

Enriched domain pair

Phylogenetic profile method

FSW = 0.0151

Unknown

ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT3G26618

Predicted

Shared biological function

Enriched domain pair

Phylogenetic profile method

FSW = 0.1939

Unknown

ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3) TRANSLATION RELEASE FACTOR
AT1G32340

Predicted

Reconstituted Complex

Phenotypic Enhancement

FSW = 0.0645

Unknown

NHL8 PROTEIN BINDING / ZINC ION BINDING
AT3G13440

Predicted

biochemical

FSW = 0.0345

Unknown

METHYLTRANSFERASE/ NUCLEIC ACID BINDING
AT4G12460

Predicted

Affinity Capture-MS

FSW = 0.0736

Unknown

ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING
AT1G29940Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0200

Unknown

NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT4G27640

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0076

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT4G30991Predicted

Affinity Capture-MS

FSW = 0.0218

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT2G23080

Predicted

Affinity Capture-MS

FSW = 0.0139

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G21440

Predicted

two hybrid

interaction prediction

FSW = 0.0474

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454