Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12920 - ( ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) translation release factor )
25 Proteins interacs with AT1G12920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.0125
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G52140 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0282
| Class C:plasma membrane | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.0060
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G47010 | Predictedinteraction predictionAffinity Capture-WesternSynthetic Rescue | FSW = 0.0264
| Class C:plasma membrane | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT4G11420 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0424
| Class C:plasma membrane | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT3G53110 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0365
| Class C:plasma membrane | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT5G15680 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0173
| Class C:plasma membrane | BINDING |
AT5G20920 | PredictedAffinity Capture-MS | FSW = 0.0646
| Class C:plasma membrane | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT5G41790 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0108
| Unknown | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT1G18070 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridReconstituted ComplexReconstituted ComplexReconstituted ComplexPhenotypic Enhancementinterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted ComplexAffinity Capture-MStwo hybridAffinity Capture-Westernbiochemical | FSW = 0.1121
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT2G01690 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0091
| Unknown | BINDING |
AT1G64330 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0260
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
AT1G17745 | Predictedtwo hybridinteraction prediction | FSW = 0.0110
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT4G30990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0111
| Unknown | BINDING |
AT5G40820 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0179
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G47880 | PredictedShared biological functionEnriched domain pairPhylogenetic profile method | FSW = 0.0151
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT3G26618 | PredictedShared biological functionEnriched domain pairPhylogenetic profile method | FSW = 0.1939
| Unknown | ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3) TRANSLATION RELEASE FACTOR |
AT1G32340 | PredictedReconstituted ComplexPhenotypic Enhancement | FSW = 0.0645
| Unknown | NHL8 PROTEIN BINDING / ZINC ION BINDING |
AT3G13440 | Predictedbiochemical | FSW = 0.0345
| Unknown | METHYLTRANSFERASE/ NUCLEIC ACID BINDING |
AT4G12460 | PredictedAffinity Capture-MS | FSW = 0.0736
| Unknown | ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING |
AT1G29940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0200
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT4G27640 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0076
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT4G30991 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G21440 | Predictedtwo hybridinteraction prediction | FSW = 0.0474
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454