Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G40820 - ( ATRAD3 binding / inositol or phosphatidylinositol kinase/ phosphotransferase alcohol group as acceptor / protein serine/threonine kinase )

114 Proteins interacs with AT5G40820
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G05710

Predicted

Affinity Capture-MS

FSW = 0.0441

Unknown

ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE
AT3G47520

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0041

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G12360

Predicted

Synthetic Lethality

FSW = 0.0160

Unknown

KEU (KEULE) PROTEIN TRANSPORTER
AT2G06510

Predicted

two hybrid

biochemical

biochemical

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2334

Unknown

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT3G52140Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0120

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT4G26970

Predicted

interaction prediction

FSW = 0.0162

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT3G48190

Predicted

Protein-peptide

FSW = 0.1871

Unknown

ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE
AT4G04350

Predicted

interaction prediction

FSW = 0.0122

Unknown

EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G11630

Predicted

synthetic growth defect

FSW = 0.0707

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT5G63110

Predicted

Synthetic Rescue

FSW = 0.0502

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G75950

Predicted

Synthetic Rescue

FSW = 0.0044

Unknown

SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G51800

Predicted

Protein-peptide

FSW = 0.0228

Unknown

ATG2 AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT4G35830

Predicted

Affinity Capture-MS

FSW = 0.0473

Unknown

ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO)
AT1G08820

Predicted

interologs mapping

FSW = 0.0041

Unknown

VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE
AT3G18524

Predicted

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

in vitro

in vivo

FSW = 0.1570

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT4G11380

Predicted

Protein-peptide

FSW = 0.0160

Unknown

BETA-ADAPTIN PUTATIVE
AT5G22770

Predicted

Protein-peptide

FSW = 0.0145

Unknown

ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G62740

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0219

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT1G12920

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0179

Unknown

ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR
AT1G16970

Predicted

Synthetic Rescue

Synthetic Rescue

Phenotypic Suppression

FSW = 0.1055

Unknown

KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT2G15240

Predicted

interologs mapping

FSW = 0.0379

Unknown

UNC-50 FAMILY PROTEIN
AT5G57015

Predicted

two hybrid

FSW = 0.0202

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G30260

Predicted

two hybrid

FSW = 0.0178

Unknown

U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G26720

Predicted

Phenotypic Suppression

FSW = 0.1042

Unknown

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G13330

Predicted

Phenotypic Enhancement

FSW = 0.0915

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TAT BINDING PROTEIN 1-INTERACTING (INTERPROIPR010776) HAS 2425 BLAST HITS TO 2142 PROTEINS IN 283 SPECIES ARCHAE - 50 BACTERIA - 240 METAZOA - 929 FUNGI - 179 PLANTS - 47 VIRUSES - 23 OTHER EUKARYOTES - 957 (SOURCE NCBI BLINK)
AT1G06960

Predicted

interologs mapping

two hybrid

interaction prediction

FSW = 0.0189

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT4G02060

Predicted

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0581

Unknown

PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G24490

Predicted

two hybrid

biochemical

biochemical

biochemical

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0796

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT4G02070

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1421

Unknown

MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING
AT5G41580

Predicted

Synthetic Rescue

FSW = 0.0612

Unknown

ZINC ION BINDING
AT4G30860

Predicted

Synthetic Rescue

FSW = 0.0185

Unknown

SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE
AT3G27640

Predicted

Synthetic Lethality

FSW = 0.0153

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G44900

Predicted

biochemical

FSW = 0.1013

Unknown

ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT5G61000

Predicted

Protein-peptide

FSW = 0.0889

Unknown

REPLICATION PROTEIN PUTATIVE
AT4G38130

Predicted

Synthetic Rescue

FSW = 0.0513

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT1G65470

Predicted

Phenotypic Enhancement

FSW = 0.1642

Unknown

FAS1 (FASCIATA 1) HISTONE BINDING
AT2G29570

Predicted

synthetic growth defect

FSW = 0.1395

Unknown

PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT1G35940Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1689

Unknown

PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT1G53240

Predicted

Affinity Capture-MS

FSW = 0.0109

Unknown

MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL
AT5G26710

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0229

Unknown

GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE
AT2G35630

Predicted

Phenotypic Enhancement

FSW = 0.0347

Unknown

MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING
AT5G41150

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1222

Unknown

UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT2G31970

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.2086

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT3G25980

Predicted

Phenotypic Suppression

FSW = 0.0661

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT3G28730

Predicted

synthetic growth defect

Phenotypic Enhancement

Synthetic Rescue

FSW = 0.0396

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT1G61700

Predicted

Affinity Capture-MS

FSW = 0.0158

Unknown

DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10)
AT3G12530

Predicted

Synthetic Lethality

FSW = 0.0117

Unknown

PSF2
AT2G21790

Predicted

interologs mapping

interologs mapping

Synthetic Rescue

FSW = 0.0548

Unknown

RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT5G20850

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2092

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT5G57450

Predicted

Phenotypic Suppression

Phenotypic Suppression

FSW = 0.1380

Unknown

XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G66130

Predicted

Protein-peptide

Phenotypic Suppression

FSW = 0.2996

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT2G31270

Predicted

Phenotypic Suppression

FSW = 0.0124

Unknown

CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING
AT5G63960

Predicted

Protein-peptide

Synthetic Lethality

FSW = 0.1123

Unknown

EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G71230

Predicted

Phenotypic Suppression

Phenotypic Suppression

FSW = 0.0154

Unknown

CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING
AT5G54260

Predicted

Phenotypic Suppression

Protein-peptide

Synthetic Lethality

synthetic growth defect

FSW = 0.2207

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G05210

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0727

Unknown

ERCC1 5-FLAP ENDONUCLEASE
AT2G37560

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0844

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT3G28030

Predicted

Phenotypic Enhancement

FSW = 0.0762

Unknown

UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT2G36200

Predicted

Phenotypic Enhancement

FSW = 0.0217

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT3G05740

Predicted

two hybrid

FSW = 0.1818

Unknown

RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G16270

Predicted

two hybrid

FSW = 0.0340

Unknown

SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4)
AT1G02970

Predicted

Phenotypic Suppression

Phenotypic Enhancement

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0133

Unknown

WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE
AT3G54710

Predicted

Phenotypic Suppression

FSW = 0.0098

Unknown

CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B) CYCLIN-DEPENDENT PROTEIN KINASE
AT4G32700

Predicted

Phenotypic Suppression

FSW = 0.0274

Unknown

DNA-DIRECTED DNA POLYMERASE FAMILY PROTEIN
AT1G80370

Predicted

Phenotypic Suppression

FSW = 0.0133

Unknown

CYCA24 (CYCLIN A24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G06150

Predicted

Phenotypic Suppression

Phenotypic Suppression

FSW = 0.0131

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G11300

Predicted

Phenotypic Suppression

FSW = 0.0253

Unknown

CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G02680

Predicted

Protein-peptide

FSW = 0.0991

Unknown

NBS1 (NIJMEGEN BREAKAGE SYNDROME 1)
AT3G23590

Predicted

Protein-peptide

FSW = 0.1041

Unknown

RFR1 (REF4-RELATED 1)
AT5G57160

Predicted

Protein-peptide

FSW = 0.0402

Unknown

ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT1G10930

Predicted

Phenotypic Enhancement

FSW = 0.2185

Unknown

RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G18090

Predicted

Phenotypic Enhancement

FSW = 0.1959

Unknown

EXONUCLEASE PUTATIVE
AT1G24290

Predicted

interologs mapping

FSW = 0.1192

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G29940Predicted

Reconstituted Complex

biochemical

interaction prediction

FSW = 0.0311

Unknown

NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G52740

Predicted

synthetic growth defect

FSW = 0.0541

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G59890

Predicted

Synthetic Rescue

FSW = 0.0413

Unknown

SNL5 (SIN3-LIKE 5)
AT1G66740

Predicted

Synthetic Rescue

synthetic growth defect

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1211

Unknown

SGA2
AT1G78770

Predicted

Phenotypic Enhancement

FSW = 0.0112

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT2G20000

Predicted

Phenotypic Enhancement

FSW = 0.0216

Unknown

HBT (HOBBIT) BINDING
AT3G02820

Predicted

synthetic growth defect

FSW = 0.1963

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G06670

Predicted

Phenotypic Suppression

FSW = 0.0392

Unknown

BINDING
AT3G11270

Predicted

interologs mapping

FSW = 0.0085

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G42660

Predicted

synthetic growth defect

Phenotypic Enhancement

Synthetic Lethality

Synthetic Lethality

FSW = 0.1711

Unknown

NUCLEOTIDE BINDING
AT3G57870

Predicted

Synthetic Lethality

FSW = 0.0260

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT4G25120Predicted

Synthetic Rescue

synthetic growth defect

FSW = 0.2197

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G30870

Predicted

synthetic growth defect

FSW = 0.1197

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G26680

Predicted

Synthetic Lethality

FSW = 0.1559

Unknown

ENDONUCLEASE PUTATIVE
AT1G07270

Predicted

Synthetic Lethality

FSW = 0.0714

Unknown

CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT1G08840Predicted

Synthetic Lethality

FSW = 0.1891

Unknown

EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G49490

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G67190

Predicted

Synthetic Lethality

FSW = 0.1148

Unknown

F-BOX FAMILY PROTEIN
AT3G58560

Predicted

Phenotypic Enhancement

FSW = 0.1177

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT3G60860

Predicted

Synthetic Lethality

FSW = 0.0251

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G00660

Predicted

synthetic growth defect

FSW = 0.0213

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT4G29170

Predicted

Phenotypic Suppression

FSW = 0.0567

Unknown

ATMND1
AT5G41880

Predicted

Synthetic Lethality

FSW = 0.1134

Unknown

POLA3 DNA PRIMASE
AT5G43010

Predicted

interologs mapping

FSW = 0.0060

Unknown

RPT4A ATPASE
AT5G43500

Predicted

synthetic growth defect

FSW = 0.0931

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT4G33270

Predicted

Phenotypic Suppression

Phenotypic Suppression

FSW = 0.0361

Unknown

CDC201 SIGNAL TRANSDUCER
AT1G67320

Predicted

Synthetic Lethality

FSW = 0.0574

Unknown

DNA PRIMASE LARGE SUBUNIT FAMILY
AT2G27120

Predicted

Synthetic Lethality

FSW = 0.0536

Unknown

TIL2 (TILTED 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT3G05480

Predicted

Phenotypic Suppression

FSW = 0.0968

Unknown

RAD9
AT3G25100

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.2050

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT4G16970

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.0881

Unknown

ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G02820

Predicted

Synthetic Rescue

FSW = 0.0865

Unknown

RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING
AT5G63920

Predicted

Synthetic Lethality

FSW = 0.2397

Unknown

DNA TOPOISOMERASE III ALPHA PUTATIVE
AT1G12040

Predicted

Affinity Capture-MS

FSW = 0.0133

Unknown

LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL
AT1G11475

Predicted

Affinity Capture-MS

FSW = 0.0149

Unknown

NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G12270

Predicted

Affinity Capture-MS

FSW = 0.0154

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT1G47230

Predicted

Phenotypic Suppression

FSW = 0.0087

Unknown

CYCLIN PUTATIVE
AT2G45810

Predicted

synthetic growth defect

FSW = 0.0163

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G02010

Predicted

Synthetic Lethality

FSW = 0.0158

Unknown

SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER
AT1G01960

Predicted

Synthetic Lethality

FSW = 0.0274

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT1G10450

Predicted

Synthetic Rescue

FSW = 0.0277

Unknown

SNL6 (SIN3-LIKE 6)

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454