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AT4G02060 - ( PRL (PROLIFERA) ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding )

35 Proteins interacs with AT4G02060

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G78300	Experimental	FSW = 0.0029	Class A: nucleus Class B: vacuole plasma membrane peroxisome cytosol cytoskeleton Class D: cytosol (p = 0.67)	GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G66750	Predicted in vivo	FSW = 0.0581	Class C: nucleus	CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT1G26310	Predicted interologs mapping Reconstituted Complex Synthetic Rescue	FSW = 0.0543	Class C: nucleus	CAL (CAULIFLOWER) DNA BINDING / TRANSCRIPTION FACTOR
AT1G44900	Predicted in vivo in vivo in vivo in vivo Co-purification Colocalization co-fractionation Co-fractionation Affinity Capture-MS Affinity Capture-Western Co-purification Co-purification two hybrid Reconstituted Complex in vivo Reconstituted Complex two hybrid Affinity Capture-MS Co-purification Colocalization co-fractionation Co-fractionation Synthetic Lethality Affinity Capture-Western Co-expression	FSW = 0.3750	Class C: nucleus	ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT5G45400	Predicted two hybrid Co-expression	FSW = 0.1823	Class C: nucleus	REPLICATION PROTEIN PUTATIVE
AT5G61000	Predicted two hybrid	FSW = 0.1711	Class C: nucleus	REPLICATION PROTEIN PUTATIVE
AT1G51510	Predicted two hybrid Co-expression	FSW = 0.0256	Class C: nucleus	Y14 RNA BINDING / PROTEIN BINDING
AT2G03710	Predicted interologs mapping Synthetic Rescue Reconstituted Complex	FSW = 0.0369	Class C: nucleus	SEP4 (SEPALLATA 4) DNA BINDING / TRANSCRIPTION FACTOR
AT1G18040	Predicted in vivo	FSW = 0.0219	Class C: nucleus	CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT2G37560	Predicted two hybrid Synthetic Lethality Affinity Capture-MS Co-expression	FSW = 0.3053	Unknown	ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT5G40820	Predicted Affinity Capture-Western Synthetic Lethality	FSW = 0.0581	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT3G12280	Predicted in vitro Affinity Capture-MS Phenotypic Enhancement in vivo two hybrid Co-expression	FSW = 0.0084	Unknown	RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G07270	Predicted Reconstituted Complex in vivo in vivo Colocalization Colocalization Colocalization two hybrid Affinity Capture-Western Co-expression	FSW = 0.1644	Unknown	CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT2G01120	Predicted Affinity Capture-MS Co-expression	FSW = 0.3029	Unknown	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING
AT2G07690	Predicted interaction prediction two hybrid in vivo in vivo co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Co-purification Co-purification Affinity Capture-MS two hybrid in vivo Affinity Capture-MS co-fractionation Co-purification Affinity Capture-Western interologs mapping interaction prediction Phylogenetic profile method Co-expression	FSW = 0.2800	Unknown	MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT2G16440	Predicted in vivo in vivo in vivo in vivo in vivo in vivo Co-purification Colocalization Reconstituted Complex Affinity Capture-Western Affinity Capture-Western Synthetic Lethality Co-purification Co-purification Reconstituted Complex Co-purification Affinity Capture-Western Co-expression	FSW = 0.5586	Unknown	DNA REPLICATION LICENSING FACTOR PUTATIVE
AT2G20980	Predicted Synthetic Rescue two hybrid two hybrid in vivo in vitro two hybrid Affinity Capture-MS Synthetic Lethality	FSW = 0.3529	Unknown	MCM10
AT2G29680	Predicted two hybrid in vivo Affinity Capture-Western	FSW = 0.1021	Unknown	CDC6 (CELL DIVISION CONTROL 6)
AT3G09660	Predicted Affinity Capture-Western Phylogenetic profile method Co-expression	FSW = 0.1620	Unknown	MCM8 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G25100	Predicted two hybrid in vitro in vitro co-fractionation Co-fractionation Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS two hybrid two hybrid in vitro Affinity Capture-MS co-fractionation Co-fractionation Affinity Capture-Western interologs mapping Synthetic Rescue interaction prediction Co-expression	FSW = 0.2073	Unknown	CDC45 (CELL DIVISION CYCLE 45)
AT4G12620	Predicted two hybrid Affinity Capture-MS	FSW = 0.2240	Unknown	ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G16970	Predicted synthetic growth defect two hybrid biochemical synthetic growth defect	FSW = 0.1560	Unknown	ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G27650	Predicted Affinity Capture-MS	FSW = 0.0282	Unknown	PEL1 (PELOTA) TRANSLATION RELEASE FACTOR
AT4G29910	Predicted two hybrid Co-expression	FSW = 0.1373	Unknown	ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT5G10960	Predicted Affinity Capture-MS	FSW = 0.0090	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G16690	Predicted two hybrid Co-expression	FSW = 0.2532	Unknown	ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3) PROTEIN BINDING
AT5G27620	Predicted in vivo Affinity Capture-MS Co-expression	FSW = 0.0348	Unknown	CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G44635	Predicted in vivo in vivo in vivo in vivo in vivo Co-purification Co-purification Reconstituted Complex two hybrid Reconstituted Complex Co-purification Synthetic Lethality Affinity Capture-Western in vitro	FSW = 0.2854	Unknown	MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT5G46280	Predicted two hybrid in vivo in vivo in vivo interologs mapping Colocalization co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-MS Co-purification Co-purification Affinity Capture-Western two hybrid two hybrid in vivo Affinity Capture-MS two hybrid in vivo Affinity Capture-Western Colocalization co-fractionation Co-fractionation interologs mapping Co-purification interologs mapping interaction prediction Phylogenetic profile method Co-expression	FSW = 0.2674	Unknown	DNA REPLICATION LICENSING FACTOR PUTATIVE
AT4G30820	Predicted in vivo in vitro two hybrid Affinity Capture-MS	FSW = 0.0787	Unknown	CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED
AT1G47290	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0248	Unknown	AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING)
AT3G02820	Predicted Affinity Capture-MS Co-expression	FSW = 0.0727	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G27000	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0084	Unknown	ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G49010	Predicted Affinity Capture-MS	FSW = 0.1890	Unknown	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)
AT5G66640	Predicted in vitro two hybrid	FSW = 0.0045	Unknown	DAR3 (DA1-RELATED PROTEIN 3)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT4G02060 - ( PRL (PROLIFERA) ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding )

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Class B:

Class D:

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite