Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G66750 - ( CAK4 (CDK-ACTIVATING KINASE 4) kinase/ protein binding / protein serine/threonine kinase )
36 Proteins interacs with AT1G66750| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G48750
   | Experimentalprotein complementation assay | FSW = 0.1922
| Class A:nucleuscytosolClass B:plasma membraneClass D:cytosol (p = 0.67) | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT4G28980
| ExperimentalAffinity Capture-MSco-fractionationCo-fractionationprotein complementation assayaffinity technology | FSW = 0.4865
| Class A:nucleuscytosol | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
| AT5G08690
| ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0586
| Class A:nucleusClass B:vacuoleplastidplasma membranemitochondrioncytosolClass D:mitochondrion (p = 0.82) | ATP SYNTHASE BETA CHAIN 2 MITOCHONDRIAL |
| AT2G36010
| Experimentalprotein complementation assay | FSW = 0.0627
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G23430
| Experimentalprotein complementation assay | FSW = 0.4654
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
| AT5G48820
| Experimentalprotein complementation assay | FSW = 0.5221
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82) | ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
| AT2G32710
| Experimentalprotein complementation assay | FSW = 0.4200
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82) | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
| AT3G24810
| Experimentalprotein complementation assay | FSW = 0.5301
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82) | ICK3 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
| AT1G15570
| Experimentaltwo hybrid | FSW = 0.3207
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82) | CYCA23 (CYCLIN A23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT3G19150
| Experimentalprotein complementation assay | FSW = 0.5489
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82) | KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
| AT4G16143
| ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0342
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | IMPA-2 (IMPORTIN ALPHA ISOFORM 2) BINDING / PROTEIN TRANSPORTER |
| AT3G50630
| Experimentalprotein complementation assay | FSW = 0.4658
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | KRP2 (KIP-RELATED PROTEIN 2) CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR/ KINASE INHIBITOR/ PROTEIN BINDING |
| AT1G49620
| Experimentalprotein complementation assay | FSW = 0.5090
| Class A:nucleusClass B:cytosol | ICK5 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
| AT4G30820
| ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0768
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
| AT5G27620
| ExperimentalAffinity Capture-MStwo hybridprotein complementation assayaffinity technology | FSW = 0.4008
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT3G54180
| Experimentalprotein complementation assay | FSW = 0.4032
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
| AT2G38620
| Experimentalprotein complementation assay | FSW = 0.7010
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G63610
| Experimentalprotein complementation assay | FSW = 0.1569
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G27960
| Experimentalprotein complementation assay | FSW = 0.3906
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
| AT2G27970
| Experimentalprotein complementation assay | FSW = 0.3094
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G65420
| Experimentalprotein complementation assay | FSW = 0.6238
| Unknown | CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G10440
| Experimentalprotein complementation assaytwo hybrid | FSW = 0.5786
| Unknown | CYCD42 (CYCLIN D42) CYCLIN-DEPENDENT PROTEIN KINASE |
| AT4G37630
| Experimentalprotein complementation assay | FSW = 0.5486
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
| AT4G03270
| Experimentalprotein complementation assay | FSW = 0.6116
| Unknown | CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE |
| AT5G11300
| Experimentaltwo hybrid | FSW = 0.1669
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT3G11520
| Experimentaltwo hybrid | FSW = 0.0493
| Unknown | CYCB13 (CYCLIN B13) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT1G16330
| Experimentaltwo hybrid | FSW = 0.1778
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
| AT2G22490
| Experimentaltwo hybrid | FSW = 0.4198
| Unknown | CYCD21 (CYCLIN D21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR/ PROTEIN BINDING |
| AT5G41370
| PredictedPhenotypic EnhancementCo-purification | FSW = 0.0713
| Class C:nucleuscytosol | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
| AT1G18040
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4518
| Class C:nucleus | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
| AT4G02060
| Predictedin vivo | FSW = 0.0581
| Class C:nucleus | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G02490
| Predictedtwo hybrid | FSW = 0.0043
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
| AT5G55670
| Predictedtwo hybrid | FSW = 0.0241
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G12400
| Predictedin vitroAffinity Capture-Western | FSW = 0.1401
| Unknown | DNA BINDING |
| AT1G20930
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4025
| Unknown | CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE |
| AT1G76540
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5977
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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