Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G28980 - ( cyclin-dependent kinase-activating kinase 1At / CDK-activating kinase 1At (CAK1) )
26 Proteins interacs with AT4G28980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.1613
| Class A:nucleuscytosolClass B:plasma membrane | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G66750 | ExperimentalAffinity Capture-MSco-fractionationCo-fractionationprotein complementation assayaffinity technology | FSW = 0.4865
| Class A:nucleuscytosol | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT1G49620 | Experimentalprotein complementation assay | FSW = 0.5795
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | ICK5 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G16270 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.1379
| Unknown | INVOLVED IN INTRACELLULAR PROTEIN TRANSPORT LOCATED IN MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S VHS (INTERPROIPR002014) ENTH/VHS (INTERPROIPR008942) HAS 113 BLAST HITS TO 112 PROTEINS IN 49 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 48 FUNGI - 1 PLANTS - 23 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G67580 | ExperimentalAffinity Capture-MSprotein complementation assayaffinity technology | FSW = 0.4063
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G27960 | Experimentalprotein complementation assay | FSW = 0.3875
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT2G27970 | Experimentalprotein complementation assay | FSW = 0.3067
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G47230 | Experimentalprotein complementation assay | FSW = 0.3756
| Unknown | CYCLIN PUTATIVE |
AT5G65420 | Experimentalprotein complementation assay | FSW = 0.6255
| Unknown | CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G12280 | Experimentalprotein complementation assay | FSW = 0.0305
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G48160 | Experimentaltwo hybrid | FSW = 0.2580
| Unknown | DEL1 (DP-E2F-LIKE 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G14960 | Experimentaltwo hybrid | FSW = 0.1504
| Unknown | DEL2 (DP-E2F-LIKE 2) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G32710 | Experimentaltwo hybrid | FSW = 0.6406
| Unknown | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT5G03415 | Experimentaltwo hybrid | FSW = 0.1283
| Unknown | DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION |
AT2G23430 | Experimentaltwo hybrid | FSW = 0.5711
| Unknown | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G18040 | Experimentalco-fractionationCo-fractionationprotein complementation assay | FSW = 0.2551
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT5G02470 | Experimentaltwo hybrid | FSW = 0.0522
| Unknown | DPA TRANSCRIPTION FACTOR |
AT1G73690 | Experimentalprotein complementation assay | FSW = 0.2772
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G54180 | Experimentalprotein complementation assay | FSW = 0.3340
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G38620 | Experimentalprotein complementation assay | FSW = 0.5143
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76540 | Experimentalprotein complementation assay | FSW = 0.5333
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT5G10440 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.6122
| Unknown | CYCD42 (CYCLIN D42) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G27620 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.2940
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G20930 | Experimentaltwo hybrid | FSW = 0.3692
| Unknown | CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT4G37630 | Experimentaltwo hybrid | FSW = 0.5838
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
AT3G01330 | Experimentaltwo hybrid | FSW = 0.0282
| Unknown | DEL3 (DP-E2F-LIKE PROTEIN 3) DNA BINDING / TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454