Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G20930 - ( CDKB22 (CYCLIN-DEPENDENT KINASE B22) cyclin-dependent protein kinase/ kinase )
27 Proteins interacs with AT1G20930Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.1169
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G43810![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0250
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0280
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT1G47870![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.1250
| Unknown | ATE2F2 DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR |
AT1G02680![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0043
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G23430![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.2699
| Unknown | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G19150![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.3289
| Unknown | KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G49620![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.3630
| Unknown | ICK5 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT5G39670![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.2735
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G21274![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0444
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT4G14640![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0455
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
AT2G27960![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.2198
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT3G51920![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0381
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT2G41090![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0117
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
AT3G54180![]() ![]() ![]() ![]() | Experimentalprotein complementation assay | FSW = 0.2557
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT4G37490![]() ![]() ![]() ![]() | Experimentalprotein complementation assay | FSW = 0.1806
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G06150![]() ![]() ![]() ![]() | Experimentalprotein complementation assay | FSW = 0.0573
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G16330![]() ![]() ![]() ![]() | Experimentalprotein complementation assaytwo hybrid | FSW = 0.2222
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G11300![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.2064
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G28980![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.3692
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT2G27970![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.1585
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G65420![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.4339
| Unknown | CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G34460![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0153
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G66750![]() ![]() ![]() ![]() | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4025
| Unknown | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT1G76540![]() ![]() ![]() ![]() | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4847
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G38620![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.4671
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G56130![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0774
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454