Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G27960 - ( CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) cyclin-dependent protein kinase/ protein binding )
61 Proteins interacs with AT2G27960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimentaltwo hybridpull downAffinity Capture-MStwo hybridReconstituted Complexprotein complementation assayaffinity technology | FSW = 0.2127
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G14310 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0625
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELL WALL EXPRESSED IN MALE GAMETOPHYTE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) HAS 1571 BLAST HITS TO 1320 PROTEINS IN 206 SPECIES ARCHAE - 6 BACTERIA - 142 METAZOA - 581 FUNGI - 102 PLANTS - 66 VIRUSES - 5 OTHER EUKARYOTES - 669 (SOURCE NCBI BLINK) |
AT4G28980 | Experimentalprotein complementation assay | FSW = 0.3875
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT1G66750 | Experimentalprotein complementation assay | FSW = 0.3906
| Unknown | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT3G48160 | Experimentalprotein complementation assay | FSW = 0.1894
| Unknown | DEL1 (DP-E2F-LIKE 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G48820 | Experimentalprotein complementation assay | FSW = 0.3569
| Unknown | ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G32710 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.3375
| Unknown | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT5G03415 | Experimentaltwo hybrid | FSW = 0.0623
| Unknown | DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION |
AT2G23430 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.3982
| Unknown | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G18040 | Experimentalprotein complementation assay | FSW = 0.1862
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT3G19150 | Experimentalprotein complementation assay | FSW = 0.3752
| Unknown | KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G50630 | Experimentalprotein complementation assay | FSW = 0.3751
| Unknown | KRP2 (KIP-RELATED PROTEIN 2) CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR/ KINASE INHIBITOR/ PROTEIN BINDING |
AT1G20930 | Experimentaltwo hybrid | FSW = 0.2198
| Unknown | CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT2G22490 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.2456
| Unknown | CYCD21 (CYCLIN D21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR/ PROTEIN BINDING |
AT1G47230 | Experimentalprotein complementation assay | FSW = 0.2986
| Unknown | CYCLIN PUTATIVE |
AT3G53880 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0025
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G54180 | Experimentalpull downAffinity Capture-MSReconstituted Complexprotein complementation assaytwo hybridaffinity technology | FSW = 0.3042
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G76540 | ExperimentalAffinity Capture-MSprotein complementation assaytwo hybridaffinity technology | FSW = 0.4219
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G38620 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.3841
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G50070 | Experimentalprotein complementation assay | FSW = 0.1925
| Unknown | CYCD33 (CYCLIN D33) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G65420 | Experimentalprotein complementation assay | FSW = 0.3484
| Unknown | CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G10440 | Experimentalprotein complementation assay | FSW = 0.3034
| Unknown | CYCD42 (CYCLIN D42) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G37630 | Experimentalprotein complementation assay | FSW = 0.3252
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G03270 | Experimentalprotein complementation assay | FSW = 0.3542
| Unknown | CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G27620 | Experimentalprotein complementation assay | FSW = 0.2471
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G13840 | Experimentalprotein complementation assay | FSW = 0.0516
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT2G26760 | Experimentaltwo hybrid | FSW = 0.0148
| Unknown | CYCB14 (CYCLIN B14) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G67260 | Experimentaltwo hybrid | FSW = 0.1825
| Unknown | CYCD32 (CYCLIN D32) CYCLIN-DEPENDENT PROTEIN KINASE |
AT3G56310 | Predictedtwo hybridtwo hybrid | FSW = 0.0678
| Unknown | ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE |
AT4G04910 | PredictedSynthetic Lethality | FSW = 0.0073
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G07940 | Predictedtwo hybrid | FSW = 0.0048
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G20200 | PredictedReconstituted Complexsynthetic growth defect | FSW = 0.0190
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT1G53750 | PredictedReconstituted Complex | FSW = 0.0369
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT3G51840 | Predictedtwo hybrid | FSW = 0.0346
| Unknown | ACX4 (ACYL-COA OXIDASE 4) ACYL-COA OXIDASE/ OXIDOREDUCTASE |
AT2G24490 | Predictedtwo hybridShared biological functionCo-expression | FSW = 0.0362
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT1G43190 | Predictedtwo hybridtwo hybrid | FSW = 0.0829
| Unknown | POLYPYRIMIDINE TRACT-BINDING PROTEIN PUTATIVE / HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE |
AT3G61890 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G47720 | Predictedtwo hybrid | FSW = 0.0081
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.0064
| Unknown | ATEB1A MICROTUBULE BINDING |
AT5G20850 | Predictedtwo hybridtwo hybrid | FSW = 0.0178
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G45190 | Predictedtwo hybridtwo hybrid | FSW = 0.0817
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G48630 | Predictedtwo hybridtwo hybrid | FSW = 0.0546
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G61980 | Predictedtwo hybrid | FSW = 0.0404
| Unknown | AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT1G01750 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING |
AT1G65990 | PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | TYPE 2 PEROXIREDOXIN-RELATED / THIOL SPECIFIC ANTIOXIDANT / MAL ALLERGEN FAMILY PROTEIN |
AT1G16330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1383
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G78770 | PredictedAffinity Capture-Western | FSW = 0.0296
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G48150 | PredictedAffinity Capture-Western | FSW = 0.0845
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT2G20000 | PredictedAffinity Capture-Western | FSW = 0.0787
| Unknown | HBT (HOBBIT) BINDING |
AT1G07270 | PredictedAffinity Capture-Western | FSW = 0.0316
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G77720 | Predictedinterologs mappingEnriched domain pairCo-expression | FSW = 0.0831
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G10580 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0194
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G15770 | PredictedSynthetic Lethality | FSW = 0.0180
| Unknown | RNA BINDING / PROTEIN BINDING |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0069
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT4G22290 | PredictedSynthetic Rescue | FSW = 0.0148
| Unknown | UBIQUITIN THIOLESTERASE |
AT3G05870 | Predictedtwo hybrid | FSW = 0.0756
| Unknown | APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT5G53970 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | AMINOTRANSFERASE PUTATIVE |
AT3G16090 | Predictedtwo hybrid | FSW = 0.0335
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT3G61150 | Predictedtwo hybrid | FSW = 0.0359
| Unknown | HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G46940 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE FAMILY |
AT2G27970 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4946
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454