Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G47720 - ( acetyl-CoA C-acyltransferase putative / 3-ketoacyl-CoA thiolase putative )
64 Proteins interacs with AT5G47720| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G48230
   | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2304
| Class C:cytosol | ACAT2 (ACETOACETYL-COA THIOLASE 2) ACETYL-COA C-ACETYLTRANSFERASE/ CATALYTIC |
| AT2G21540
| PredictedAffinity Capture-MS | FSW = 0.0787
| Class C:cytosol | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
| AT5G48880
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0948
| Class C:cytosol | PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
| AT1G29880
| PredictedAffinity Capture-MS | FSW = 0.0714
| Class C:cytosol | GLYCYL-TRNA SYNTHETASE / GLYCINE--TRNA LIGASE |
| AT3G16050
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0910
| Class C:cytosol | A37 PROTEIN HETERODIMERIZATION |
| AT3G01280
| Predictedtwo hybrid | FSW = 0.0556
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
| AT2G33150
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0739
| Unknown | PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3) ACETYL-COA C-ACYLTRANSFERASE |
| AT5G09590
| PredictedPhenotypic Enhancement | FSW = 0.0226
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT1G54270
| PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT3G22110
| PredictedPhenotypic Enhancement | FSW = 0.0325
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G26590
| Predictedbiochemical | FSW = 0.0124
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT2G29990
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0922
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
| AT1G51040
| PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT3G06040
| PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT4G23430
| Predictedtwo hybrid | FSW = 0.0787
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT4G13430
| PredictedAffinity Capture-MS | FSW = 0.0618
| Unknown | IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) 4 IRON 4 SULFUR CLUSTER BINDING / HYDRO-LYASE/ LYASE |
| AT4G28950
| PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
| AT2G37790
| PredictedPhenotypic Enhancement | FSW = 0.0544
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT1G63110
| PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
| AT1G04710
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0769
| Unknown | PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
| AT5G59950
| PredictedAffinity Capture-MS | FSW = 0.0594
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT4G34430
| PredictedAffinity Capture-MS | FSW = 0.0340
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT4G13980
| Predictedbiochemical | FSW = 0.0045
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G72050
| PredictedGene fusion method | FSW = 0.0251
| Unknown | TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT2G18450
| PredictedAffinity Capture-MS | FSW = 0.0781
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
| AT2G29540
| PredictedPhenotypic Enhancement | FSW = 0.0146
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT1G05180
| PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
| AT4G16420
| PredictedPhenotypic Enhancement | FSW = 0.0284
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT2G27970
| Predictedtwo hybrid | FSW = 0.0056
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G54940
| PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT1G10280
| PredictedAffinity Capture-MS | FSW = 0.0597
| Unknown | UNKNOWN PROTEIN |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.0706
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT2G37420
| PredictedPhenotypic Enhancement | FSW = 0.0448
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT3G11230
| PredictedPhenotypic Enhancement | FSW = 0.0471
| Unknown | YIPPEE FAMILY PROTEIN |
| AT4G17380
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0860
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
| AT5G19820
| Predictedco-fractionationCo-fractionation | FSW = 0.0761
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G20060
| PredictedAffinity Capture-MS | FSW = 0.1044
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
| AT1G10090
| PredictedAffinity Capture-MS | FSW = 0.0428
| Unknown | UNKNOWN PROTEIN |
| AT1G54560 | Predictedbiochemical | FSW = 0.0117
| Unknown | XIE MOTOR/ PROTEIN BINDING |
| AT1G66240
| PredictedAffinity Capture-MS | FSW = 0.0579
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
| AT1G66740
| PredictedAffinity Capture-MSCo-purification | FSW = 0.0461
| Unknown | SGA2 |
| AT2G03410
| PredictedAffinity Capture-MS | FSW = 0.0504
| Unknown | MO25 FAMILY PROTEIN |
| AT2G16230
| PredictedAffinity Capture-WesternCo-purification | FSW = 0.1047
| Unknown | CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT2G43360
| PredictedAffinity Capture-MS | FSW = 0.0858
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
| AT3G06470
| Predictedbiochemical | FSW = 0.0331
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
| AT3G25260
| Predictedtwo hybrid | FSW = 0.0952
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
| AT3G49420 | PredictedAffinity Capture-Western | FSW = 0.0571
| Unknown | GOT1-LIKE FAMILY PROTEIN |
| AT3G59410
| PredictedAffinity Capture-MS | FSW = 0.0735
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G04695
| PredictedCo-purificationCo-purification | FSW = 0.0945
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G04700
| PredictedAffinity Capture-Western | FSW = 0.0434
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G14240
| Predictedbiochemical | FSW = 0.0064
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
| AT4G19880
| PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
| AT5G26250
| PredictedAffinity Capture-Western | FSW = 0.0336
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT5G66640
| Predictedbiochemical | FSW = 0.0056
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
| AT4G03430
| PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT1G54290
| PredictedAffinity Capture-MS | FSW = 0.0377
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT2G27960
| Predictedtwo hybrid | FSW = 0.0081
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
| AT1G11650
| PredictedGene fusion method | FSW = 0.0211
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
| AT4G27000
| PredictedGene fusion method | FSW = 0.0331
| Unknown | ATRBP45C RNA BINDING |
| AT3G14580
| PredictedGene fusion method | FSW = 0.0529
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
| AT4G29240
| PredictedGene fusion method | FSW = 0.0335
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
| AT5G23340
| PredictedGene fusion method | FSW = 0.0515
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS F-BOX FAMILY PROTEIN (FBL4) (TAIRAT4G154751) HAS 9095 BLAST HITS TO 3545 PROTEINS IN 210 SPECIES ARCHAE - 0 BACTERIA - 454 METAZOA - 4575 FUNGI - 774 PLANTS - 2118 VIRUSES - 15 OTHER EUKARYOTES - 1159 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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