Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66640 - ( DAR3 (DA1-RELATED PROTEIN 3) )
91 Proteins interacs with AT5G66640| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G02090
   | Predictedbiochemical | FSW = 0.0097
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
| AT3G09630
| Predictedbiochemical | FSW = 0.0124
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT4G17340
| Predictedbiochemical | FSW = 0.0541
| Unknown | TIP22 (TONOPLAST INTRINSIC PROTEIN 22) WATER CHANNEL |
| AT1G22780
| Predictedbiochemical | FSW = 0.0036
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G22840
| Predictedbiochemical | FSW = 0.0140
| Unknown | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
| AT4G21980
| Predictedbiochemical | FSW = 0.0181
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
| AT3G26590
| Predictedbiochemical | FSW = 0.1921
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT2G30710
| Predictedbiochemical | FSW = 0.0024
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
| AT3G29100
| Predictedbiochemical | FSW = 0.0113
| Unknown | VTI13 SNARE BINDING / RECEPTOR |
| AT5G03240 | Predictedbiochemical | FSW = 0.0090
| Unknown | UBQ3 (POLYUBIQUITIN 3) PROTEIN BINDING |
| AT5G13450
| Predictedbiochemical | FSW = 0.0226
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
| AT3G60820
| Predictedbiochemical | FSW = 0.0032
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G48170
| Predictedbiochemical | FSW = 0.0191
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
| AT2G45130
| Predictedbiochemical | FSW = 0.0278
| Unknown | SPX3 (SPX DOMAIN GENE 3) |
| AT1G74030
| PredictedPhenotypic Suppression | FSW = 0.0158
| Unknown | ENOLASE PUTATIVE |
| AT1G48850
| Predictedbiochemical | FSW = 0.0165
| Unknown | EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE |
| AT1G11860
| Predictedbiochemical | FSW = 0.0131
| Unknown | AMINOMETHYLTRANSFERASE PUTATIVE |
| AT5G15450
| Predictedbiochemical | FSW = 0.0067
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G61410
| Predictedbiochemical | FSW = 0.0189
| Unknown | RPE CATALYTIC/ RIBULOSE-PHOSPHATE 3-EPIMERASE |
| AT1G02780
| PredictedAffinity Capture-MSAffinity Capture-MSbiochemicalReconstituted Complex | FSW = 0.0233
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G13560
| Predictedbiochemical | FSW = 0.0057
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT4G36490
| Predictedbiochemical | FSW = 0.0169
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
| AT5G27630
| Predictedbiochemical | FSW = 0.0736
| Unknown | ACBP5 (ACYL-COA BINDING PROTEIN 5) ACYL-COA BINDING |
| AT3G04050
| Predictedbiochemical | FSW = 0.0139
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT4G36640
| Predictedbiochemical | FSW = 0.0097
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT5G44290
| Predictedbiochemical | FSW = 0.0170
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT1G04750
| Predictedbiochemical | FSW = 0.0310
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
| AT2G32670
| Predictedbiochemical | FSW = 0.0173
| Unknown | ATVAMP725 |
| AT4G33090
| Predictedbiochemical | FSW = 0.0122
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
| AT2G19760
| Predictedbiochemical | FSW = 0.0065
| Unknown | PRF1 (PROFILIN 1) ACTIN BINDING |
| AT5G57015
| Predictedbiochemical | FSW = 0.0018
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G14170
| Predictedbiochemical | FSW = 0.0101
| Unknown | CHC1 |
| AT5G16820
| Predictedbiochemical | FSW = 0.0145
| Unknown | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G55620
| Predictedin vitrotwo hybrid | FSW = 0.0061
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT3G13920
| Predictedbiochemical | FSW = 0.0021
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT4G02060
| Predictedin vitrotwo hybrid | FSW = 0.0045
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G10110
| Predictedbiochemical | FSW = 0.0344
| Unknown | MEE67 (MATERNAL EFFECT EMBRYO ARREST 67) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER |
| AT4G04870
| Predictedbiochemical | FSW = 0.0135
| Unknown | CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE |
| AT1G53530
| Predictedbiochemical | FSW = 0.0102
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
| AT3G60510
| Predictedbiochemical | FSW = 0.0077
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
| AT3G55430
| Predictedbiochemical | FSW = 0.0170
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE |
| AT5G47720
| Predictedbiochemical | FSW = 0.0056
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
| AT4G21710
| Predictedbiochemical | FSW = 0.0021
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G15240
| Predictedbiochemical | FSW = 0.0152
| Unknown | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
| AT1G35530 | Predictedbiochemical | FSW = 0.0071
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G59580
| Predictedbiochemical | FSW = 0.0111
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
| AT1G76310
| Predictedbiochemical | FSW = 0.0189
| Unknown | CYCB24 (CYCLIN B24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT1G80510
| Predictedbiochemical | FSW = 0.0079
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
| AT2G16710
| Predictedbiochemical | FSW = 0.0068
| Unknown | HESB-LIKE DOMAIN-CONTAINING PROTEIN |
| AT2G19910
| Predictedbiochemical | FSW = 0.0126
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G32730
| Predictedbiochemical | FSW = 0.0032
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT2G34180
| Predictedbiochemical | FSW = 0.0411
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G34250
| Predictedbiochemical | FSW = 0.0186
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
| AT2G36060
| Predictedbiochemical | FSW = 0.0092
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
| AT2G38490
| Predictedbiochemical | FSW = 0.0139
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT2G39590
| Predictedbiochemical | FSW = 0.0043
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
| AT2G40110
| Predictedbiochemical | FSW = 0.0090
| Unknown | YIPPEE FAMILY PROTEIN |
| AT2G43190
| Predictedbiochemical | FSW = 0.0479
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
| AT2G44065
| Predictedbiochemical | FSW = 0.0152
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
| AT3G02000
| Predictedbiochemical | FSW = 0.0206
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
| AT3G11240
| Predictedbiochemical | FSW = 0.0115
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
| AT3G13060
| Predictedbiochemical | FSW = 0.0126
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
| AT3G14070
| Predictedbiochemical | FSW = 0.0170
| Unknown | CAX9 (CATION EXCHANGER 9) CATION TRANSMEMBRANE TRANSPORTER/ CATIONCATION ANTIPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ POTASSIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUM ION TRANSMEMBRANE TRANSPORTER |
| AT3G16565
| Predictedbiochemical | FSW = 0.0303
| Unknown | ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G18030
| Predictedbiochemical | FSW = 0.0170
| Unknown | ATHAL3A FMN BINDING / PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE |
| AT3G19670 | Predictedbiochemical | FSW = 0.0086
| Unknown | PROTEIN BINDING |
| AT3G24830
| Predictedbiochemical | FSW = 0.0180
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT3G29070
| Predictedbiochemical | FSW = 0.0140
| Unknown | PROTEIN TRANSMEMBRANE TRANSPORTER |
| AT3G45740
| Predictedbiochemical | FSW = 0.0106
| Unknown | HYDROLASE FAMILY PROTEIN / HAD-SUPERFAMILY PROTEIN |
| AT3G48960
| Predictedbiochemical | FSW = 0.0105
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
| AT3G49880
| Predictedbiochemical | FSW = 0.0251
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
| AT3G59790
| Predictedbiochemical | FSW = 0.0117
| Unknown | ATMPK10 MAP KINASE/ KINASE |
| AT4G02120
| Predictedbiochemical | FSW = 0.0165
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
| AT4G10130
| Predictedbiochemical | FSW = 0.0050
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT4G17510
| Predictedbiochemical | FSW = 0.0068
| Unknown | UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3) UBIQUITIN THIOLESTERASE |
| AT4G17640
| Predictedbiochemical | FSW = 0.0199
| Unknown | CKB2 PROTEIN KINASE CK2 REGULATOR |
| AT4G19003
| Predictedbiochemical | FSW = 0.0044
| Unknown | VPS25 |
| AT4G21480
| Predictedbiochemical | FSW = 0.0241
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G28070
| Predictedbiochemical | FSW = 0.0237
| Unknown | AFG1-LIKE ATPASE FAMILY PROTEIN |
| AT4G31590
| Predictedbiochemical | FSW = 0.0316
| Unknown | ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT5G11500
| Predictedbiochemical | FSW = 0.0111
| Unknown | UNKNOWN PROTEIN |
| AT5G18400
| Predictedbiochemical | FSW = 0.0189
| Unknown | UNKNOWN PROTEIN |
| AT5G22030
| Predictedbiochemical | FSW = 0.0131
| Unknown | UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT5G44830
| Predictedbiochemical | FSW = 0.0341
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
| AT5G45020
| Predictedbiochemical | FSW = 0.0158
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 907 METAZOA - 22 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 478 (SOURCE NCBI BLINK) |
| AT5G49130
| Predictedbiochemical | FSW = 0.0476
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT5G61150
| Predictedbiochemical | FSW = 0.0020
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
| AT1G77460
| Predictedin vitroin vivo | FSW = 0.0155
| Unknown | BINDING |
| AT5G66610
| Predictedin vitro | FSW = 0.0167
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
| AT4G32840
| Predictedin vitro | FSW = 0.0095
| Unknown | PFK6 (PHOSPHOFRUCTOKINASE 6) 6-PHOSPHOFRUCTOKINASE |
| AT2G17050 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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