Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G16820 - ( HSF3 (HEAT SHOCK FACTOR 3) DNA binding / transcription factor )
41 Proteins interacs with AT5G16820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G26150 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.0422
| Class A:nucleusClass D:nucleus (p = 0.78) | ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR |
AT4G17750 | Experimentaltwo hybridAffinity Capture-Westernprotein complementation assay | FSW = 0.1013
| Class A:nucleusClass D:nucleus (p = 0.78) | HSF1 (HEAT SHOCK FACTOR 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT4G15802 | Experimentaltwo hybridReconstituted Complex | FSW = 0.1118
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S HEAT SHOCK FACTOR BINDING 1 (INTERPROIPR009643) HAS 178 BLAST HITS TO 178 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 122 FUNGI - 0 PLANTS - 37 VIRUSES - 0 OTHER EUKARYOTES - 19 (SOURCE NCBI BLINK) |
AT1G16970 | Predictedin vitroAffinity Capture-MS | FSW = 0.0199
| Class C:nucleus | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT1G48050 | Predictedin vitro | FSW = 0.0851
| Class C:nucleus | KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT1G16690 | Predictedco-fractionationCo-fractionation | FSW = 0.0364
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT3G13445 | Predictedin vitroin vivo | FSW = 0.0269
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G17590 | Predictedco-fractionationCo-fractionation | FSW = 0.0092
| Class C:nucleus | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT4G32420 | PredictedReconstituted Complex | FSW = 0.0773
| Class C:nucleus | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT3G02990 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0216
| Class C:nucleus | ATHSFA1E DNA BINDING / TRANSCRIPTION FACTOR |
AT4G24440 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0480
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S) |
AT3G14980 | Predictedco-fractionationCo-fractionation | FSW = 0.0967
| Class C:nucleus | PHD FINGER TRANSCRIPTION FACTOR PUTATIVE |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0049
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G56000 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0868
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0163
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G47930 | Predictedco-fractionationCo-fractionation | FSW = 0.0117
| Unknown | ATGLDH (L-GALACTONO-14-LACTONE DEHYDOROGENASE) L-GULONO-14-LACTONE DEHYDROGENASE/ GALACTONOLACTONE DEHYDROGENASE |
AT3G27300 | Predictedtwo hybrid | FSW = 0.0500
| Unknown | G6PD5 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 5) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT4G02450 | PredictedReconstituted Complex | FSW = 0.0591
| Unknown | GLYCINE-RICH PROTEIN |
AT5G19990 | Predictedco-fractionationCo-fractionation | FSW = 0.0256
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT4G14350 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G79920 | Predictedin vitroReconstituted Complex | FSW = 0.0811
| Unknown | ATP BINDING |
AT5G02490 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0617
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT3G29800 | Predictedtwo hybrid | FSW = 0.0178
| Unknown | AAA-TYPE ATPASE FAMILY |
AT2G32720 | PredictedAffinity Capture-Western | FSW = 0.0696
| Unknown | CB5-B (CYTOCHROME B5 ISOFORM B) HEME BINDING |
AT5G09250 | Predictedin vitroAffinity Capture-MS | FSW = 0.0818
| Unknown | KIWI DNA BINDING / PROTEIN BINDING / TRANSCRIPTION COACTIVATOR |
AT1G54140 | Predictedin vitro | FSW = 0.0173
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G55300 | Predictedin vitroAffinity Capture-MS | FSW = 0.0214
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT4G11330 | PredictedAffinity Capture-MSin vivo | FSW = 0.0392
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G01390 | PredictedAffinity Capture-MSin vitro | FSW = 0.0394
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G19040 | Predictedin vitro | FSW = 0.0887
| Unknown | HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT5G48570 | PredictedReconstituted Complex | FSW = 0.0463
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE / FK506-BINDING PROTEIN PUTATIVE |
AT1G01560 | Predictedco-fractionationCo-fractionation | FSW = 0.0303
| Unknown | ATMPK11 MAP KINASE/ KINASE |
AT1G69750 | Predictedtwo hybrid | FSW = 0.0615
| Unknown | COX19 FAMILY PROTEIN |
AT2G32830 | PredictedAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.1013
| Unknown | PHT5 INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT3G01350 | Predictedco-fractionationCo-fractionation | FSW = 0.0727
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G25585 | Predictedtwo hybrid | FSW = 0.0308
| Unknown | AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT4G27000 | Predictedtwo hybrid | FSW = 0.0242
| Unknown | ATRBP45C RNA BINDING |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G58830 | Predictedsynthetic growth defect | FSW = 0.0140
| Unknown | HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN |
AT5G66640 | Predictedbiochemical | FSW = 0.0145
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G49130 | Predictedco-fractionationCo-fractionationsynthetic growth defect | FSW = 0.0790
| Unknown | MATE EFFLUX FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454