Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09250 - ( KIWI DNA binding / protein binding / transcription coactivator )
12 Proteins interacs with AT5G09250Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G10920 | Experimentaltwo hybridReconstituted Complex | FSW = 0.0124
| Class D:nucleus (p = 0.78) | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT4G29940 | Experimentaltwo hybrid | FSW = 0.2667
| Class D:nucleus (p = 0.78) | PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A) PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G03490 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0625
| Unknown | PEX19-1 (PEROXIN 19-1) |
AT5G17550 | Predictedtwo hybrid | FSW = 0.0750
| Unknown | PEX19-2 |
AT3G13445 | Predictedin vitro | FSW = 0.0346
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G16820 | Predictedin vitroAffinity Capture-MS | FSW = 0.0818
| Unknown | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G55520 | Predictedin vitro | FSW = 0.0845
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G67970 | Predictedin vitroAffinity Capture-MS | FSW = 0.1637
| Unknown | AT-HSFA8 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G29570 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0144
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT2G16950 | Predictedtwo hybridtwo hybrid | FSW = 0.0112
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT1G32750 | Predictedin vitro | FSW = 0.0942
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT3G19040 | Predictedin vitro | FSW = 0.2315
| Unknown | HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454