Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17750 - ( HSF1 (HEAT SHOCK FACTOR 1) DNA binding / protein binding / transcription factor )
15 Proteins interacs with AT4G17750| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G02500
   | Experimentaltwo hybrid | FSW = 0.0395
| Class A:nucleusClass B:vacuoleplastidplasma membraneperoxisome | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
| AT3G48750
| ExperimentalReconstituted Complexin vitro | FSW = 0.0040
| Class A:nucleusClass B:plasma membranecytosol | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT3G13445
| Experimentalpull downaffinity technologytwo hybrid | FSW = 0.0114
| Class A:nucleusClass D:nucleus (p = 0.78) | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT5G16820
| Experimentaltwo hybridAffinity Capture-Westernprotein complementation assay | FSW = 0.1013
| Class A:nucleusClass D:nucleus (p = 0.78) | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G63870
| Experimentaltwo hybrid | FSW = 0.1481
| Class A:nucleusClass D:nucleus (p = 0.78) | PP7 (SERINE/THREONINE PHOSPHATASE 7) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G26150
| Experimentalprotein complementation assaytwo hybrid | FSW = 0.0970
| Class A:nucleusClass D:nucleus (p = 0.78) | ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G55520
| ExperimentalReconstituted Complexpull downaffinity technology | FSW = 0.0283
| Class A:nucleusClass D:nucleus (p = 0.78) | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
| AT3G12580
| Experimentaltwo hybrid | FSW = 0.0232
| Class B:vacuoleplasma membranenucleusmitochondrion | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT2G41140
| Experimentalprotein kinase assay | FSW = 0.1481
| Class B:vacuoleplasma membranenucleus | CRK1 (CDPK-RELATED KINASE 1) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE |
| AT5G66030
| Experimental | FSW = 0.0808
| Class B:vacuolenucleusgolgiClass D:nucleus (p = 0.78) | ATGRIP PROTEIN BINDING |
| AT3G19100
| Experimental | FSW = 0.0529
| Class B:plasma membranenucleusClass D:nucleus (p = 0.78) | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
| RP11-82K18. | ExperimentalReconstituted Complex | FSW = 0.2222
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
| AT5G13820
| ExperimentalReconstituted Complextwo hybrid | FSW = 0.1270
| Unknown | TBP1 (TELOMERIC DNA BINDING PROTEIN 1) DNA BINDING / DOUBLE-STRANDED TELOMERIC DNA BINDING |
| AT4G15802
| Experimentaltwo hybrid | FSW = 0.1625
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S HEAT SHOCK FACTOR BINDING 1 (INTERPROIPR009643) HAS 178 BLAST HITS TO 178 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 122 FUNGI - 0 PLANTS - 37 VIRUSES - 0 OTHER EUKARYOTES - 19 (SOURCE NCBI BLINK) |
| AT5G03720
| Predictedin vitroin vivo | FSW = 0.1625
| Class C:nucleus | AT-HSFA3 DNA BINDING / TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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