Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G14350 - ( protein kinase family protein )
65 Proteins interacs with AT4G14350Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G02500 | PredictedPhenotypic Enhancement | FSW = 0.0392
| Class C:plasma membrane | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT3G28715 | Predictedinteraction prediction | FSW = 0.0114
| Class C:plasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT1G27450 | PredictedPhenotypic Enhancement | FSW = 0.0624
| Class C:plasma membrane | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT1G75170 | PredictedPhenotypic Suppression | FSW = 0.0300
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G63290 | PredictedAffinity Capture-MS | FSW = 0.0111
| Class C:plasma membrane | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT5G15680 | Predictedinteraction prediction | FSW = 0.0261
| Class C:plasma membrane | BINDING |
AT3G49370 | PredictedPhenotypic Enhancement | FSW = 0.1331
| Class C:plasma membrane | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT1G03920 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2095
| Class C:plasma membrane | PROTEIN KINASE PUTATIVE |
AT3G23310 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1236
| Class C:plasma membrane | PROTEIN KINASE PUTATIVE |
AT3G50000 | Predictedsynthetic growth defect | FSW = 0.0290
| Class C:plasma membrane | CKA2 (CASEIN KINASE II ALPHA CHAIN 2) KINASE |
AT2G45170 | PredictedPhenotypic Suppression | FSW = 0.0465
| Unknown | ATATG8E MICROTUBULE BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0312
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G77750 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1000
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE |
AT5G54770 | PredictedSynthetic Rescuesynthetic growth defectPhenotypic Enhancement | FSW = 0.1528
| Unknown | THI1 PROTEIN HOMODIMERIZATION |
AT3G56160 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.1646
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.0320
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G07180 | PredictedPhenotypic Suppression | FSW = 0.0494
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT1G21700 | PredictedPhenotypic SuppressionAffinity Capture-Western | FSW = 0.0838
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT5G16820 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0648
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G36170 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0899
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G72560 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT2G07727 | Predictedtwo hybridtwo hybrid | FSW = 0.0084
| Unknown | CYTOCHROME B (MTCYB) (COB) (CYTB) |
AT5G47630 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G14270 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.2037
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.0236
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G47990 | PredictedPhenotypic Suppression | FSW = 0.0298
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT5G18380 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
AT5G20430 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0142
| Unknown | MOB1/PHOCEIN FAMILY PROTEIN |
AT1G05180 | PredictedPhenotypic SuppressionSynthetic RescuePhenotypic SuppressionSynthetic Rescue | FSW = 0.2393
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G19730 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.1719
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G09810 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.2105
| Unknown | ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11) |
AT1G10980 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementSynthetic Rescuesynthetic growth defect | FSW = 0.1054
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G47830 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.0961
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G66590 | PredictedPhenotypic Enhancement | FSW = 0.0983
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | PredictedPhenotypic EnhancementSynthetic Rescuesynthetic growth defect | FSW = 0.0787
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G80500 | PredictedPhenotypic Enhancement | FSW = 0.1040
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.0353
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G27340 | PredictedPhenotypic Suppression | FSW = 0.0247
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.0242
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G10130 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1054
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G09270 | PredictedPhenotypic Enhancement | FSW = 0.0102
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G47290 | PredictedPhenotypic Enhancement | FSW = 0.1257
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT4G14000 | PredictedPhenotypic Enhancement | FSW = 0.0797
| Unknown | UNKNOWN PROTEIN |
AT4G21490 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1338
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G29580 | PredictedSynthetic RescueSynthetic Lethality | FSW = 0.2503
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G38890 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | EXORIBONUCLEASE-RELATED |
ATCG00905 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1193
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
AT4G36070 | PredictedPhenotypic Enhancement | FSW = 0.0370
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G01670 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT5G11500 | PredictedSynthetic Lethality | FSW = 0.1080
| Unknown | UNKNOWN PROTEIN |
AT5G17330 | PredictedPhenotypic Enhancement | FSW = 0.0741
| Unknown | GAD CALMODULIN BINDING / GLUTAMATE DECARBOXYLASE |
AT5G17860 | Predictedsynthetic growth defect | FSW = 0.1403
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G56060 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
AT5G64760 | PredictedPhenotypic Suppression | FSW = 0.0333
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT4G19050 | Predictedinteraction prediction | FSW = 0.0307
| Unknown | ATP BINDING / PROTEIN BINDING |
AT5G18200 | Predictedinteraction prediction | FSW = 0.0529
| Unknown | UTPGALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ RIBOSE-5-PHOSPHATE ADENYLYLTRANSFERASE |
AT2G20560 | Predictedinteraction prediction | FSW = 0.0149
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT5G06600 | Predictedinteraction prediction | FSW = 0.0193
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G27000 | Predictedinteraction prediction | FSW = 0.0082
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G09890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1790
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G19400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1318
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G30640 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1301
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G33080 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1902
| Unknown | PROTEIN KINASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454