Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G23310 - ( protein kinase putative )
19 Proteins interacs with AT3G23310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G43810 | Experimentalprotein array | FSW = 0.0248
| Class A:plasma membraneClass D:nucleus (p = 0.78) | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | Experimentalprotein array | FSW = 0.0363
| Class A:plasma membraneClass D:nucleus (p = 0.78) | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT4G23050 | Experimentalprotein array | FSW = 0.1270
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G51920 | Experimentalprotein array | FSW = 0.0494
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT2G41090 | Experimentalprotein array | FSW = 0.0074
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
AT4G14640 | Experimentalprotein array | FSW = 0.0454
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
AT5G21274 | Experimentalprotein array | FSW = 0.0351
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT4G14350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1236
| Class C:plasma membrane | PROTEIN KINASE FAMILY PROTEIN |
AT1G03920 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2792
| Class C:plasma membrane | PROTEIN KINASE PUTATIVE |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0097
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G20490 | Predictedtwo hybrid | FSW = 0.0455
| Unknown | NOP10 RNA BINDING |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0107
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G30220 | PredictedPhenotypic Enhancement | FSW = 0.0721
| Unknown | INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.0468
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT2G27170 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT4G33080 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2286
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G19400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3363
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G09890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4840
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G30640 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3253
| Unknown | PROTEIN KINASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454