Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G33080 - ( protein kinase putative )
31 Proteins interacs with AT4G33080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G28715 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT2G45200 | Predictedsynthetic growth defect | FSW = 0.0451
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0086
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G01300 | Predictedsynthetic growth defect | FSW = 0.0471
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT4G17270 | PredictedSynthetic Lethality | FSW = 0.0889
| Unknown | MO25 FAMILY PROTEIN |
AT5G60790 | Predictedtwo hybrid | FSW = 0.0141
| Unknown | ATGCN1 TRANSPORTER |
AT5G15680 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridSynthetic LethalityAffinity Capture-MS | FSW = 0.0508
| Unknown | BINDING |
AT3G23310 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2286
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G14350 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1902
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G03920 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4694
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G08720 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0861
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT1G55520 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT5G35530 | PredictedPhenotypic Enhancement | FSW = 0.0214
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT4G22380 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT2G17270 | PredictedPhenotypic Enhancement | FSW = 0.0239
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.0084
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G45550 | Predictedtwo hybrid | FSW = 0.0605
| Unknown | MOB1/PHOCEIN FAMILY PROTEIN |
AT1G26450 | Predictedsynthetic growth defect | FSW = 0.0247
| Unknown | BETA-13-GLUCANASE-RELATED |
AT2G19170 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | SLP3 SERINE-TYPE PEPTIDASE |
AT2G20560 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT3G11910 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G27000 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G08320 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G20610 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G18200 | PredictedAffinity Capture-MS | FSW = 0.0994
| Unknown | UTPGALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ RIBOSE-5-PHOSPHATE ADENYLYLTRANSFERASE |
AT2G19400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2394
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G09890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3350
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G30640 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2338
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G02300 | PredictedGene fusion method | FSW = 0.1422
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT3G26500 | PredictedGene fusion method | FSW = 0.0676
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT1G53330 | PredictedGene fusion method | FSW = 0.1422
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454