Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G08720 - ( S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) kinase/ protein kinase )
37 Proteins interacs with AT3G08720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G35160 | PredictedSynthetic Lethality | FSW = 0.0299
| Class C:nucleus | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G79020 | PredictedAffinity Capture-Westerntwo hybridSynthetic Lethality | FSW = 0.0455
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT4G17730 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR |
AT5G55400 | PredictedAffinity Capture-MS | FSW = 0.0646
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0075
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G02520 | PredictedSynthetic Lethality | FSW = 0.0258
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G25400 | PredictedAffinity Capture-Westerntwo hybridPhenotypic Enhancement | FSW = 0.0597
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT5G38480 | Predictedsynthetic growth defect | FSW = 0.0511
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G52640 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0159
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G57340 | Predictedinterologs mapping | FSW = 0.0463
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT3G10540 | PredictedPhenotypic SuppressionPhenotypic EnhancementbiochemicalPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementbiochemicalSynthetic RescueEnriched domain pairCo-expression | FSW = 0.0952
| Unknown | 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE PUTATIVE |
AT1G76850 | Predictedtwo hybrid | FSW = 0.0462
| Unknown | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) |
AT2G04750 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT3G08730 | PredictedShared biological functionEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0215
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G42120 | PredictedPhenotypic Enhancement | FSW = 0.0581
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G21170 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | SEC5B |
AT1G50030 | PredictedPhenotypic SuppressionPhenotypic Suppressionco-fractionationCo-fractionation | FSW = 0.0431
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT5G47240 | Predictedtwo hybridtwo hybrid | FSW = 0.0121
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT1G05785 | Predictedinterologs mapping | FSW = 0.0195
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT2G01600 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.1189
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT1G26690 | Predictedsynthetic growth defect | FSW = 0.0173
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G73570 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0423
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT5G04510 | Predictedbiochemicalbiochemicalbiochemicalsynthetic growth defectSynthetic RescuePhenotypic Enhancementinterologs mapping | FSW = 0.0668
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
AT5G54620 | Predictedsynthetic growth defect | FSW = 0.0515
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G13720 | PredictedPhenotypic Enhancement | FSW = 0.1212
| Unknown | PRA8 |
AT4G19800 | Predictedinterologs mapping | FSW = 0.0224
| Unknown | GLYCOSYL HYDROLASE FAMILY 18 PROTEIN |
AT5G58190 | Predictedinterologs mapping | FSW = 0.0454
| Unknown | ECT10 |
AT1G29630 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | NUCLEASE |
AT3G55170 | Predictedtwo hybrid | FSW = 0.0418
| Unknown | 60S RIBOSOMAL PROTEIN L35 (RPL35C) |
AT3G55280 | Predictedtwo hybrid | FSW = 0.0074
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37550 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G53710 | Predictedinteraction prediction | FSW = 0.0174
| Unknown | AGD6 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT4G33080 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0861
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G33070 | PredictedGene fusion method | FSW = 0.1141
| Unknown | NSP2 (NITRILE SPECIFIER PROTEIN 2) |
AT1G53330 | PredictedGene fusion method | FSW = 0.1636
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G02300 | PredictedGene fusion method | FSW = 0.1636
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT3G26500 | PredictedGene fusion method | FSW = 0.0798
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454