Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G08730 - ( PK1 (PROTEIN-SERINE KINASE 1) kinase/ protein binding / protein kinase/ protein serine/threonine kinase )
102 Proteins interacs with AT3G08730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G08850 | ExperimentalcoimmunoprecipitationAffinity Capture-Western | FSW = 0.0212
| Unknown | RAPTOR1 NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G56000 | Predictedin vivoAffinity Capture-MS | FSW = 0.0109
| Class C:cytosol | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT5G10450 | Predictedin vivoin vitro | FSW = 0.0245
| Class C:cytosol | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2761
| Class C:cytosol | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.2421
| Class C:cytosol | A37 PROTEIN HETERODIMERIZATION |
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0021
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT1G72730 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0134
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G49010 | PredictedPhenotypic Suppression | FSW = 0.0192
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G28710 | PredictedAffinity Capture-MSPhenotypic Suppression | FSW = 0.0329
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT2G29080 | Predictedtwo hybrid | FSW = 0.0056
| Unknown | FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.1687
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G74560 | Predictedsynthetic growth defectSynthetic Lethalityinterologs mapping | FSW = 0.0110
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.1239
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G09820 | PredictedCo-purification | FSW = 0.0132
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT3G14420 | Predictedinterologs mapping | FSW = 0.0157
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3032
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT2G27290 | Predictedtwo hybrid | FSW = 0.0352
| Unknown | UNKNOWN PROTEIN |
AT3G55200 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | SPLICING FACTOR PUTATIVE |
AT5G16150 | Predictedin vitro | FSW = 0.0033
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G13580 | Predictedtwo hybrid | FSW = 0.0081
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.2275
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2205
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G13300 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
AT1G27450 | PredictedPhenotypic Enhancement | FSW = 0.0087
| Unknown | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT5G05670 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Suppressioninterologs mapping | FSW = 0.0636
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT5G17310 | PredictedAffinity Capture-Western | FSW = 0.0103
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT5G15680 | Predictedtwo hybrid | FSW = 0.0357
| Unknown | BINDING |
AT1G76850 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT5G62300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1651
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.1039
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.1364
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G59950 | PredictedAffinity Capture-Western | FSW = 0.0482
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G08720 | PredictedShared biological functionEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0215
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT5G53180 | Predictedtwo hybrid | FSW = 0.0170
| Unknown | PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.1554
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1191
| Unknown | HISTONE H2B PUTATIVE |
AT1G69220 | Predictedtwo hybridReconstituted Complex | FSW = 0.0287
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G20420 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.2016
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT5G08380 | Predictedtwo hybrid | FSW = 0.0113
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G14580 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | ATPRB1 |
AT4G07820 | Predictedtwo hybridtwo hybridtwo hybridSynthetic LethalityAffinity Capture-MSco-fractionationCo-fractionationSynthetic LethalitySynthetic RescueAffinity Capture-WesternReconstituted Complexinterologs mapping | FSW = 0.0400
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G59290 | Predictedin vitrotwo hybrid | FSW = 0.0101
| Unknown | UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3) UDP-GLUCURONATE DECARBOXYLASE/ CATALYTIC |
AT5G03730 | Predictedin vivoin vivoin vitroAffinity Capture-MS | FSW = 0.0196
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G20850 | Predictedtwo hybrid | FSW = 0.0017
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G31870 | Predictedtwo hybrid | FSW = 0.0189
| Unknown | UNKNOWN PROTEIN |
AT1G50030 | PredictedPhenotypic Suppression | FSW = 0.0240
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT2G44420 | Predictedtwo hybrid | FSW = 0.0299
| Unknown | PROTEIN N-TERMINAL ASPARAGINE AMIDOHYDROLASE FAMILY PROTEIN |
AT5G04510 | PredictedPhenotypic SuppressionPhenotypic EnhancementPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic Enhancementin vivoAffinity Capture-MS | FSW = 0.0193
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
AT5G39400 | PredictedPhenotypic Suppression | FSW = 0.0103
| Unknown | PTEN1 PHOSPHATASE |
AT5G47650 | Predictedtwo hybrid | FSW = 0.0457
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT5G52820 | Predictedtwo hybrid | FSW = 0.0085
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
AT5G45190 | Predictedtwo hybrid | FSW = 0.0432
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G48630 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | CYCLIN FAMILY PROTEIN |
AT1G16350 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0109
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT5G26751 | PredictedAffinity Capture-MSin vitroin vivotwo hybrid | FSW = 0.0037
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G56580 | Predictedin vivoin vitro | FSW = 0.0226
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT5G57610 | Predictedin vivoin vitro | FSW = 0.0441
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G61530 | Predictedtwo hybrid | FSW = 0.0239
| Unknown | SMALL G PROTEIN FAMILY PROTEIN / RHOGAP FAMILY PROTEIN |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2049
| Unknown | UNKNOWN PROTEIN |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0539
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1739
| Unknown | UNKNOWN PROTEIN |
AT1G55060 | Predictedinterologs mapping | FSW = 0.0162
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.1355
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G78970 | PredictedPhenotypic Suppression | FSW = 0.0643
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.2816
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.1066
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.1420
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3181
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.0947
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G38490 | Predictedinterologs mapping | FSW = 0.0072
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3483
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3251
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.2498
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.2544
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G20410 | PredictedSynthetic LethalitySynthetic Rescue | FSW = 0.0244
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G34250 | PredictedAffinity Capture-Western | FSW = 0.1993
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.1396
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.1825
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G51880 | PredictedAffinity Capture-Western | FSW = 0.2574
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G55160 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 4 ANTHESIS F MATURE EMBRYO STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S HEAT (INTERPROIPR000357) HAS 244 BLAST HITS TO 237 PROTEINS IN 110 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 124 FUNGI - 72 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2052
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.2464
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2670
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3070
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1607
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1795
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2266
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT4G09200 | PredictedAffinity Capture-Western | FSW = 0.0487
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
AT4G25860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1497
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2278
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G14850 | Predictedinterologs mapping | FSW = 0.0162
| Unknown | MANNOSYLTRANSFERASE PUTATIVE |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1712
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1954
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41990 | PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.0218
| Unknown | WNK8 (WITH NO LYSINE (K) KINASE 8) KINASE/ PROTEIN KINASE |
AT2G26490 | PredictedGene fusion method | FSW = 0.0101
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454