Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G78970 - ( LUP1 (LUPEOL SYNTHASE 1) beta-amyrin synthase/ lupeol synthase )
54 Proteins interacs with AT1G78970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G38510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0387
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.1435
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G28710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.2155
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT2G07050 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3314
| Unknown | CAS1 (CYCLOARTENOL SYNTHASE 1) CYCLOARTENOL SYNTHASE |
AT3G62870 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0281
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.1675
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.1888
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G14320 | PredictedPhenotypic Enhancement | FSW = 0.0242
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.0906
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G15450 | PredictedSynthetic RescuePhenotypic Enhancement | FSW = 0.0461
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.1699
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G45780 | PredictedPhenotypic Suppression | FSW = 0.0115
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT3G25800 | Predictedtwo hybrid | FSW = 0.0048
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G32670 | PredictedPhenotypic Enhancement | FSW = 0.0131
| Unknown | ATVAMP725 |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.1451
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.0254
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.0828
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.0478
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G08730 | PredictedPhenotypic Suppression | FSW = 0.0643
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G05170 | PredictedPhenotypic Suppression | FSW = 0.0391
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.1327
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT3G12530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1092
| Unknown | PSF2 |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.0202
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G33110 | PredictedPhenotypic Suppression | FSW = 0.2003
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G78290 | PredictedPhenotypic Suppression | FSW = 0.0482
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0797
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G41530 | PredictedPhenotypic Suppression | FSW = 0.1159
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.0769
| Unknown | HISTONE H4 |
AT4G16265 | PredictedSynthetic Lethality | FSW = 0.0694
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G02560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1384
| Unknown | HTA12 DNA BINDING |
AT5G09630 | PredictedPhenotypic Suppression | FSW = 0.1472
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MSPhenotypic SuppressionAffinity Capture-MS | FSW = 0.1347
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1325
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G57890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1131
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G60870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0797
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT2G34750 | PredictedPhenotypic Suppression | FSW = 0.0208
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.1944
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G18660 | PredictedPhenotypic Enhancement | FSW = 0.0286
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.1421
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.1198
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.1909
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.0535
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.0611
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT1G78950 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3824
| Unknown | BETA-AMYRIN SYNTHASE PUTATIVE |
AT3G45130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3824
| Unknown | LAS1 LANOSTEROL SYNTHASE |
AT4G15370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3107
| Unknown | BARS1 (BARUOL SYNTHASE 1) BARUOL SYNTHASE/ CATALYTIC |
AT1G78500 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3824
| Unknown | PENTACYCLIC TRITERPENE SYNTHASE PUTATIVE |
AT1G66960 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3207
| Unknown | LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE |
AT5G42600 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2990
| Unknown | MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE |
AT5G48010 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2473
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT4G15340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3824
| Unknown | ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1) ARABIDIOL SYNTHASE |
AT1G78960 | PredictedShared biological functionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2571
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT5G36150 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3824
| Unknown | ATPEN3 (PUTATIVE PENTACYCLIC TRITERPENE SYNTHASE 3) CATALYTIC/ LUPEOL SYNTHASE |
AT1G78955 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3824
| Unknown | CAMS1 (CAMELLIOL C SYNTHASE 1) BETA-AMYRIN SYNTHASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454