Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G14320 - ( 30S ribosomal protein S13 chloroplast (CS13) )
63 Proteins interacs with AT5G14320| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
| AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0349
| Class C:plastid | HISTONE H4 |
AT2G21280
   | Predictedpull down | FSW = 0.0220
| Class C:plastid | SULA BINDING / CATALYTIC/ COENZYME BINDING |
| AT2G33800
| Predictedpull down | FSW = 0.2917
| Class C:plastid | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
| AT4G31210 | Predictedpull down | FSW = 0.1638
| Class C:plastid | DNA TOPOISOMERASE FAMILY PROTEIN |
| AT2G39290
| PredictedAffinity Capture-MS | FSW = 0.0221
| Class C:plastid | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
| AT2G04842
| Predictedpull down | FSW = 0.0643
| Class C:plastid | EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE |
| AT3G55400
| PredictedPhenotypic Enhancement | FSW = 0.0074
| Class C:plastid | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT4G30690
| Predictedpull down | FSW = 0.1373
| Class C:plastid | TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN |
| AT2G22360
| Predictedpull down | FSW = 0.0684
| Class C:plastid | DNAJ HEAT SHOCK FAMILY PROTEIN |
| AT5G66470
| Predictedpull down | FSW = 0.1029
| Class C:plastid | GTP BINDING / RNA BINDING |
| AT3G03710
| Predictedpull down | FSW = 0.1895
| Class C:plastid | RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| AT1G32990
| Predictedpull down | FSW = 0.1046
| Class C:plastid | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G78630
| Predictedpull down | FSW = 0.2411
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G54670
| PredictedPhenotypic Enhancement | FSW = 0.0053
| Class C:plastid | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
| ATCG00180 | Predictedpull down | FSW = 0.1582
| Class C:plastid | RNA POLYMERASE BETA SUBUNIT-1 |
| ATCG00380 | Predictedpull down | FSW = 0.2474
| Class C:plastid | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
| ATCG00740 | Predictedpull down | FSW = 0.1675
| Class C:plastid | RNA POLYMERASE ALPHA SUBUNIT |
| ATCG00800 | Predictedpull down | FSW = 0.3344
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG00830 | Predictedpull down | FSW = 0.1939
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG01240 | Predictedpull down | FSW = 0.2896
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
| AT4G01100
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0986
| Unknown | ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING |
| AT3G28710
| PredictedPhenotypic Enhancement | FSW = 0.0242
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
| AT1G75840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0242
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
| AT4G36640
| Predictedinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1272
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT1G04750
| PredictedAffinity Capture-Western | FSW = 0.0175
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
| AT4G38680
| Predictedpull down | FSW = 0.2130
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
| AT3G02740
| PredictedPhenotypic Enhancement | FSW = 0.0199
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
| AT2G44860
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0569
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT1G76300
| PredictedPhenotypic Enhancement | FSW = 0.0156
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
| AT2G28740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1200
| Unknown | HIS4 DNA BINDING |
| AT1G65290
| Predictedpull down | FSW = 0.0605
| Unknown | MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING |
| AT3G54840
| PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | ARA6 GTP BINDING / GTPASE |
| AT2G30920
| Predictedpull down | FSW = 0.0173
| Unknown | ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3) HEXAPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE/ POLYPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE |
| AT2G18230
| PredictedAffinity Capture-MS | FSW = 0.0515
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT1G79500
| Predictedpull down | FSW = 0.0847
| Unknown | 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA) |
| AT1G32490
| Predictedpull down | FSW = 0.1226
| Unknown | ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G66520
| Predictedpull down | FSW = 0.0935
| Unknown | PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE |
| AT2G01440
| Predictedpull down | FSW = 0.1778
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT2G17510
| Predictedpull down | FSW = 0.1377
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
| AT2G20060
| Predictedpull down | FSW = 0.2567
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
| AT2G39140
| Predictedpull down | FSW = 0.0316
| Unknown | SVR1 (SUPPRESSOR OF VARIEGATION 1) RNA BINDING / PSEUDOURIDINE SYNTHASE |
| AT3G02060
| Predictedpull down | FSW = 0.0537
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G22310
| Predictedpull down | FSW = 0.2099
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
| AT4G04880
| Predictedpull down | FSW = 0.0336
| Unknown | ADENOSINE/AMP DEAMINASE FAMILY PROTEIN |
| AT4G12740
| Predictedpull down | FSW = 0.0763
| Unknown | ADENINE-DNA GLYCOSYLASE-RELATED / MYH-RELATED |
| AT4G21220
| Predictedpull down | FSW = 0.1792
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
| AT4G31150
| Predictedpull down | FSW = 0.0980
| Unknown | ENDONUCLEASE V FAMILY PROTEIN |
| AT5G49970
| Predictedpull down | FSW = 0.0238
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
| AT5G51140
| Predictedpull down | FSW = 0.1868
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
| AT5G64650
| Predictedpull down | FSW = 0.1903
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
| AT1G10280
| PredictedCo-purification | FSW = 0.0439
| Unknown | UNKNOWN PROTEIN |
| AT2G16740
| PredictedCo-purification | FSW = 0.0054
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G34890
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0986
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
| AT2G41340
| PredictedPhenotypic Enhancement | FSW = 0.0168
| Unknown | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT3G06470
| PredictedPhenotypic Enhancement | FSW = 0.0141
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
| AT3G18850
| PredictedPhenotypic Enhancement | FSW = 0.0276
| Unknown | LPAT5 ACYLTRANSFERASE |
| AT3G24495
| PredictedPhenotypic Enhancement | FSW = 0.0215
| Unknown | MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
| AT1G78970
| PredictedPhenotypic Enhancement | FSW = 0.0242
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
| AT2G31020
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0199
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT5G20560
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic RescueAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternSynthetic Rescue | FSW = 0.1353
| Unknown | BETA-13-GLUCANASE PUTATIVE |
| AT5G38890
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0824
| Unknown | EXORIBONUCLEASE-RELATED |
| AT5G17000
| PredictedCo-purification | FSW = 0.0087
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G59490
| PredictedPhenotypic Enhancement | FSW = 0.0277
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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