Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G64650 - ( ribosomal protein L17 family protein )
57 Proteins interacs with AT5G64650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G41790 | Predictedpull down | FSW = 0.1488
| Unknown | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT1G65540 | PredictedAffinity Capture-MS | FSW = 0.1108
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G63490 | Predictedpull downAffinity Capture-MS | FSW = 0.3611
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT2G33800 | Predictedpull down | FSW = 0.3125
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT2G21170 | Predictedpull down | FSW = 0.0257
| Unknown | TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE |
AT3G53900 | Predictedpull down | FSW = 0.0533
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G34620 | Predictedpull down | FSW = 0.2094
| Unknown | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G02260 | Predictedpull down | FSW = 0.3233
| Unknown | RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC |
AT5G40950 | PredictedAffinity Capture-MS | FSW = 0.2573
| Unknown | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G14320 | Predictedpull down | FSW = 0.1903
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT2G25830 | Predictedpull down | FSW = 0.0347
| Unknown | YEBC-RELATED |
AT4G11175 | Predictedpull down | FSW = 0.0738
| Unknown | TRANSLATION INITIATION FACTOR IF-1 CHLOROPLAST PUTATIVE |
AT5G66470 | Predictedpull down | FSW = 0.1763
| Unknown | GTP BINDING / RNA BINDING |
AT3G03710 | Predictedpull down | FSW = 0.2322
| Unknown | RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
AT5G30510 | Predictedpull down | FSW = 0.2026
| Unknown | RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G01310 | PredictedAffinity Capture-MS | FSW = 0.2611
| Unknown | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
AT1G24240 | Predictedpull down | FSW = 0.1403
| Unknown | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
AT2G43030 | Predictedpull down | FSW = 0.0915
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT1G78630 | Predictedpull downAffinity Capture-MS | FSW = 0.3586
| Unknown | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G09770 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0157
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
ATCG00180 | Predictedpull down | FSW = 0.2468
| Unknown | RNA POLYMERASE BETA SUBUNIT-1 |
ATCG00800 | Predictedpull down | FSW = 0.3186
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00380 | Predictedpull down | FSW = 0.3574
| Unknown | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
ATCG00830 | Predictedpull down | FSW = 0.3183
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG01240 | Predictedpull downAffinity Capture-MS | FSW = 0.2927
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.1692
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG00790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2713
| Unknown | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
AT3G02770 | Predictedpull down | FSW = 0.0333
| Unknown | DIMETHYLMENAQUINONE METHYLTRANSFERASE FAMILY PROTEIN |
AT1G75230 | Predictedpull down | FSW = 0.0718
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT4G30930 | Predictedpull down | FSW = 0.1240
| Unknown | NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G17465 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2165
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G31460 | PredictedAffinity Capture-MS | FSW = 0.2698
| Unknown | RIBOSOMAL PROTEIN L28 FAMILY PROTEIN |
AT1G01290 | Predictedpull down | FSW = 0.1250
| Unknown | CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3) CATALYTIC |
AT1G11780 | Predictedpull down | FSW = 0.0537
| Unknown | OXIDOREDUCTASE 2OG-FE(II) OXYGENASE FAMILY PROTEIN |
AT1G66520 | Predictedpull down | FSW = 0.1311
| Unknown | PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE |
AT1G73740 | Predictedpull down | FSW = 0.1184
| Unknown | GLYCOSYL TRANSFERASE FAMILY 28 PROTEIN |
AT2G01440 | Predictedpull down | FSW = 0.2303
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT2G16930 | Predictedpull down | FSW = 0.1508
| Unknown | RIBOSOMAL PROTEIN L27 FAMILY PROTEIN |
AT2G20060 | Predictedpull down | FSW = 0.3267
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT3G13180 | Predictedpull down | FSW = 0.1774
| Unknown | NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN |
AT3G22310 | Predictedpull down | FSW = 0.3315
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
AT3G24560 | Predictedpull down | FSW = 0.1774
| Unknown | RSY3 (RASPBERRY 3) |
AT3G53180 | Predictedpull down | FSW = 0.1443
| Unknown | CATALYTIC/ GLUTAMATE-AMMONIA LIGASE |
AT4G12740 | Predictedpull down | FSW = 0.0835
| Unknown | ADENINE-DNA GLYCOSYLASE-RELATED / MYH-RELATED |
AT4G26780 | Predictedpull down | FSW = 0.0642
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
AT4G29540 | Predictedpull down | FSW = 0.1005
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
AT4G34710 | Predictedpull down | FSW = 0.2282
| Unknown | ADC2 (ARGININE DECARBOXYLASE 2) ARGININE DECARBOXYLASE |
AT4G36020 | Predictedpull down | FSW = 0.1815
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT4G37990 | Predictedpull down | FSW = 0.0369
| Unknown | ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) ARYL-ALCOHOL DEHYDROGENASE/ MANNITOL DEHYDROGENASE |
AT5G14460 | Predictedpull down | FSW = 0.0738
| Unknown | PSEUDOURIDINE SYNTHASE/ TRANSPORTER |
AT5G37530 | Predictedpull down | FSW = 0.1221
| Unknown | THIF FAMILY PROTEIN |
AT5G39940 | Predictedpull down | FSW = 0.0738
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HI0933-LIKE PROTEIN (INTERPROIPR004792) HAS 2776 BLAST HITS TO 2776 PROTEINS IN 871 SPECIES ARCHAE - 18 BACTERIA - 1933 METAZOA - 0 FUNGI - 2 PLANTS - 19 VIRUSES - 0 OTHER EUKARYOTES - 804 (SOURCE NCBI BLINK) |
AT5G51140 | Predictedpull down | FSW = 0.3786
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G07830 | PredictedAffinity Capture-MS | FSW = 0.2441
| Unknown | RIBOSOMAL PROTEIN L29 FAMILY PROTEIN |
AT1G14620 | PredictedAffinity Capture-MS | FSW = 0.2654
| Unknown | DECOY (DECOY) |
AT1G60170 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0211
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT2G28820 | Predictedinteraction prediction | FSW = 0.0973
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454