Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G25830 - ( YebC-related )

13 Proteins interacs with AT2G25830
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G08670

Predicted

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FSW = 0.0557

Class C:

plastid

 ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT2G33800

Predicted

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FSW = 0.1111

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT1G19690

Predicted

blue native page

FSW = 0.1429

Class C:

plastid

 BINDING / CATALYTIC/ COENZYME BINDING
AT2G22360

Predicted

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FSW = 0.1074

Class C:

plastid

 DNAJ HEAT SHOCK FAMILY PROTEIN
AT1G80070

Predicted

two hybrid

FSW = 0.0109

Class C:

plastid

 SUS2 (ABNORMAL SUSPENSOR 2)
AT2G22230

Predicted

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FSW = 0.0730

Class C:

plastid

 BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
AT1G17220

Predicted

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FSW = 0.1546

Class C:

plastid

 FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR
AT2G21790

Predicted

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FSW = 0.0313

Unknown

 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT3G49080

Predicted

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FSW = 0.0353

Unknown

 RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT4G14930

Predicted

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FSW = 0.0443

Unknown

 ACID PHOSPHATASE SURVIVAL PROTEIN SURE PUTATIVE
AT5G48440

Predicted

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FSW = 0.0585

Unknown

 OXIDOREDUCTASE
AT5G64650

Predicted

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FSW = 0.0347

Unknown

 RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
AT2G37840

Predicted

biochemical

FSW = 0.0133

Unknown

 PROTEIN KINASE FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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