Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G22230 - ( beta-hydroxyacyl-ACP dehydratase putative )

25 Proteins interacs with AT2G22230
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33800

Predicted

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FSW = 0.2860

Class C:

plastid

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G63490

Predicted

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FSW = 0.2140

Class C:

plastid

RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT1G03680

Predicted

tandem affinity purification

FSW = 0.0520

Class C:

plastid

ATHM1 ENZYME ACTIVATOR
AT2G04270

Predicted

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FSW = 0.4876

Class C:

plastid

RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT2G25830

Predicted

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FSW = 0.0730

Class C:

plastid

YEBC-RELATED
AT3G44890

Predicted

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FSW = 0.1523

Class C:

plastid

RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01310

Predicted

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FSW = 0.1047

Class C:

plastid

RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT5G30510

Predicted

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FSW = 0.1449

Class C:

plastid

RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G05190

Predicted

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FSW = 0.1350

Class C:

plastid

EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G24240

Predicted

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FSW = 0.0296

Class C:

plastid

RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT1G78630

Predicted

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FSW = 0.2407

Class C:

plastid

EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G43030

Predicted

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FSW = 0.0606

Class C:

plastid

RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT5G03940

Predicted

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FSW = 0.3175

Class C:

plastid

CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING
ATCG00160Predicted

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FSW = 0.1398

Class C:

plastid

CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00380Predicted

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FSW = 0.1635

Class C:

plastid

CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00800Predicted

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FSW = 0.1361

Class C:

plastid

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00810Predicted

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FSW = 0.0818

Class C:

plastid

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

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FSW = 0.1398

Class C:

plastid

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

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FSW = 0.1576

Class C:

plastid

30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT2G36530

Predicted

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FSW = 0.0652

Unknown

LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE
AT1G65290

Predicted

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FSW = 0.0667

Unknown

MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING
AT4G02930

Predicted

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FSW = 0.0876

Unknown

ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT5G26860

Predicted

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FSW = 0.2378

Unknown

LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT1G25350

Predicted

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FSW = 0.0381

Unknown

OVA9 (OVULE ABORTION 9) GLUTAMINE-TRNA LIGASE
AT2G20060

Predicted

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FSW = 0.2830

Unknown

RIBOSOMAL PROTEIN L4 FAMILY PROTEIN

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454