Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G01310 - ( ribosomal protein L5 family protein )
36 Proteins interacs with AT4G01310| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G08670
   | Predictedpull down | FSW = 0.0400
| Class C:plastid | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
| AT2G36990
| Predictedpull down | FSW = 0.1273
| Class C:plastid | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR |
| AT3G63490
| PredictedAffinity Capture-MS | FSW = 0.4105
| Class C:plastid | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
| AT5G23140
| Predictedpull down | FSW = 0.0744
| Class C:plastid | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE |
| AT4G30690
| Predictedpull down | FSW = 0.1036
| Class C:plastid | TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN |
| AT3G17170
| Predictedpull down | FSW = 0.2072
| Class C:plastid | RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G40950
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4045
| Class C:plastid | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G03710
| Predictedpull down | FSW = 0.2240
| Class C:plastid | RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| AT3G18680
| Predictedpull down | FSW = 0.0859
| Class C:plastid | ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN |
| AT4G20960
| Predictedpull down | FSW = 0.0500
| Class C:plastid | CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN |
| AT5G55280
| Predictedpull down | FSW = 0.0310
| Class C:plastid | FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE |
| AT2G22230
| Predictedpull down | FSW = 0.1047
| Class C:plastid | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
| AT1G05190
| PredictedAffinity Capture-MS | FSW = 0.4605
| Class C:plastid | EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G78630
| PredictedAffinity Capture-MS | FSW = 0.3802
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
| ATCG00740 | Predictedpull down | FSW = 0.2562
| Class C:plastid | RNA POLYMERASE ALPHA SUBUNIT |
| ATCG00790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3462
| Class C:plastid | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
| AT1G50510
| Predictedpull down | FSW = 0.0750
| Unknown | INDIGOIDINE SYNTHASE A FAMILY PROTEIN |
| AT4G38680
| Predictedpull down | FSW = 0.1194
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
| AT3G09210
| Predictedpull down | FSW = 0.0680
| Unknown | PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR |
| AT1G75230
| Predictedpull down | FSW = 0.1061
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
| AT3G17465
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4221
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G31460
| PredictedAffinity Capture-MS | FSW = 0.3878
| Unknown | RIBOSOMAL PROTEIN L28 FAMILY PROTEIN |
| AT1G79500
| Predictedpull down | FSW = 0.0837
| Unknown | 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA) |
| AT2G16930
| Predictedpull down | FSW = 0.2227
| Unknown | RIBOSOMAL PROTEIN L27 FAMILY PROTEIN |
| AT2G20060
| Predictedpull down | FSW = 0.2658
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
| AT4G04950
| Predictedpull down | FSW = 0.0209
| Unknown | THIOREDOXIN FAMILY PROTEIN |
| AT4G31870
| Predictedpull down | FSW = 0.0228
| Unknown | ATGPX7 (GLUTATHIONE PEROXIDASE 7) GLUTATHIONE PEROXIDASE |
| AT5G51140
| Predictedpull down | FSW = 0.1769
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
| AT1G07830
| PredictedAffinity Capture-MS | FSW = 0.3843
| Unknown | RIBOSOMAL PROTEIN L29 FAMILY PROTEIN |
| AT1G14620
| PredictedAffinity Capture-MS | FSW = 0.3792
| Unknown | DECOY (DECOY) |
| AT2G02760
| Predictedsynthetic growth defect | FSW = 0.0213
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
| AT4G35490
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1241
| Unknown | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G64670
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3485
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
| AT5G64650
| PredictedAffinity Capture-MS | FSW = 0.2611
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
| AT2G28820 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2134
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
| AT1G14400
| Predictedsynthetic growth defect | FSW = 0.0165
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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