Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G78630 - ( emb1473 (embryo defective 1473) structural constituent of ribosome )

58 Proteins interacs with AT1G78630
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G41790

Predicted

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FSW = 0.1288

Class C:

plastid

 CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT2G33800

Predicted

pull down

FSW = 0.4479

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G63490

Predicted

Affinity Capture-MS

FSW = 0.3569

Class C:

plastid

 RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT4G31210Predicted

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FSW = 0.1757

Class C:

plastid

 DNA TOPOISOMERASE FAMILY PROTEIN
AT5G23140

Predicted

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FSW = 0.0993

Class C:

plastid

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT1G50840

Predicted

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FSW = 0.1166

Class C:

plastid

 POLGAMMA2 (POLYMERASE GAMMA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT2G04842

Predicted

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FSW = 0.1361

Class C:

plastid

 EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE
AT2G25840

Predicted

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FSW = 0.0850

Class C:

plastid

 OVA4 (OVULE ABORTION 4) ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TRYPTOPHAN-TRNA LIGASE
AT4G30690

Predicted

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FSW = 0.2385

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT2G19870

Predicted

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FSW = 0.1188

Class C:

plastid

 TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN
AT2G04270

Predicted

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FSW = 0.2237

Class C:

plastid

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT5G40950

Predicted

Affinity Capture-MS

FSW = 0.2538

Class C:

plastid

 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G14320

Predicted

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FSW = 0.2411

Class C:

plastid

 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT2G22230

Predicted

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FSW = 0.2407

Class C:

plastid

 BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
AT1G17220

Predicted

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FSW = 0.0651

Class C:

plastid

 FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR
AT1G18440

Predicted

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FSW = 0.0535

Class C:

plastid

 PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT3G03710

Predicted

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FSW = 0.2828

Class C:

plastid

 RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
AT3G18680

Predicted

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FSW = 0.1571

Class C:

plastid

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT3G29430

Predicted

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FSW = 0.0462

Class C:

plastid

 GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE
AT5G08650

Predicted

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FSW = 0.0963

Class C:

plastid

 GTP-BINDING PROTEIN LEPA PUTATIVE
AT5G15450

Predicted

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FSW = 0.0144

Class C:

plastid

 CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G44890

Predicted

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FSW = 0.4692

Class C:

plastid

 RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01310

Predicted

Affinity Capture-MS

FSW = 0.3802

Class C:

plastid

 RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT1G24240

Predicted

pull down

FSW = 0.4162

Class C:

plastid

 RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT1G17745

Predicted

interaction prediction

two hybrid

FSW = 0.0050

Class C:

plastid

 PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT4G02260

Predicted

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FSW = 0.2482

Class C:

plastid

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
ATCG00180Predicted

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FSW = 0.2827

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00740Predicted

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FSW = 0.2630

Class C:

plastid

 RNA POLYMERASE ALPHA SUBUNIT
ATCG00780Predicted

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FSW = 0.1528

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L14 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00800Predicted

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FSW = 0.4344

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

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FSW = 0.2593

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00160Predicted

Affinity Capture-MS

FSW = 0.3996

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00790Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3176

Class C:

plastid

 CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT
AT1G18070

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0055

Unknown

 EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE
AT4G38680

Predicted

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FSW = 0.2683

Unknown

 GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G26860

Predicted

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FSW = 0.0735

Unknown

 LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT3G17465

Predicted

Affinity Capture-MS

Enriched domain pair

Co-expression

FSW = 0.1869

Unknown

 RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G03600

Predicted

Affinity Capture-MS

FSW = 0.0254

Unknown

 RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G45240

Predicted

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FSW = 0.1444

Unknown

 MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT1G79500

Predicted

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FSW = 0.1998

Unknown

 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT2G18230

Predicted

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FSW = 0.0816

Unknown

 ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G26550

Predicted

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FSW = 0.0635

Unknown

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PPIC-TYPE FAMILY PROTEIN
AT1G73740

Predicted

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FSW = 0.1166

Unknown

 GLYCOSYL TRANSFERASE FAMILY 28 PROTEIN
AT2G04560Predicted

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FSW = 0.0598

Unknown

 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G17510

Predicted

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FSW = 0.2373

Unknown

 EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE
AT2G20060

Predicted

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FSW = 0.4266

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT3G22310

Predicted

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FSW = 0.2853

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G14140

Predicted

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FSW = 0.1414

Unknown

 DMT2 (DNA METHYLTRANSFERASE 2) DNA (CYTOSINE-5-)-METHYLTRANSFERASE/ DNA BINDING / PROTEIN BINDING
AT4G21220

Predicted

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FSW = 0.2626

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G29540

Predicted

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FSW = 0.1233

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT5G50110

Predicted

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FSW = 0.0544

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN CELL CYCLE LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUCOSE INHIBITED DIVISION PROTEIN (INTERPROIPR003682) HAS 3963 BLAST HITS TO 3963 PROTEINS IN 1297 SPECIES ARCHAE - 0 BACTERIA - 2754 METAZOA - 2 FUNGI - 0 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 1189 (SOURCE NCBI BLINK)
AT5G51140

Predicted

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FSW = 0.3291

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT3G49080

Predicted

pull down

FSW = 0.2055

Unknown

 RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT5G64650

Predicted

pull down

Affinity Capture-MS

FSW = 0.3586

Unknown

 RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
AT5G64670

Predicted

Affinity Capture-MS

Affinity Capture-MS

pull down

interaction prediction

FSW = 0.3308

Unknown

 RIBOSOMAL PROTEIN L15 FAMILY PROTEIN
AT1G07830

Predicted

Affinity Capture-MS

FSW = 0.1869

Unknown

 RIBOSOMAL PROTEIN L29 FAMILY PROTEIN
AT1G14620

Predicted

Affinity Capture-MS

FSW = 0.2617

Unknown

 DECOY (DECOY)
AT2G28820Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1194

Unknown

 DECOY (DECOY)

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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